| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTOA0034 |
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| Symbol | |
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| ID | 1187324 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004633 |
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| Strand | - |
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| Start bp | 34863 |
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| End bp | 36812 |
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| Gene Length | 1950 bp |
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| Protein Length | 649 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 637408367 |
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| Product | GGDEF domain/EAL domain-containing protein |
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| Protein accession | NP_808692 |
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| Protein GI | 29171508 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 0.224173 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGAAAA AAATGATGGA TGCCTTGCGC ACCCTGATGT CCGTGCCCTC CGATAATCCT
CGGCTGCTGC AAGCTCAATA CATCGCATTG TCCCGACAAC TGCCGCTGAT GTACTTCGTG
CTGTTGGTCA ACACCTGGGC GCTTGCCTTT ACCCATTGGG CAACTGCCCC GATGTGGCTG
ACGTTGCTGG TACCGACAGT CCTCACCATC GGGTGCTGCA TTCGCGCGCG CAAGTGGCTG
CTTACGGTAA ACAAGCCGCC GCCAGCTTCA AGCACTATTC TCGAGACGCT GCGCGGCACC
AATAGGCTGG TGGGTATCAT CTCCACCGCA TTTGCGGCAT GGTCTTTGTC GATGTACCCC
TATGGCGATG CCTATACCCA GGCGCAAGTG GCGTTTTTCA TGGGCATCAC CGTGATTGTG
TGCATTTTCT GCATGATGCA TTTGCAGTCT GCAGCCTTGA TTACTGCAGT GATCGTCAAT
ACAGCGTTCG TTATTTTCTT CGCCTCAACA CACAACATCA CGTTTATCGC CACGGCTGCA
AATATCGTGC TGGTGTCGAT CGGTATGCTG ATCATTCTTC GCCATCAGTA CCGCGACTTC
ACCAGCCTGG TGAACGCCCA GTTCAAGACT GAACAACTGA GCAACGCGAA CCTGATGTTG
GCCAATCGGG ATAGCCTGAC CGGCCTGCCT AACCGTCGGC ATTTTTTCCA GACACTGGAT
ACGGCGATGA ACGAGGCACT GCTACAGCGC AGCGGGCTAG CGGTGGGTGT GCTGGATCTG
GACGGGTTCA AGCCGGTCAA CGATCTTTAT GGCCATAGTG TTGGCGACAG GCTGTTGATG
CTGGTCGCCG AACGGCTGAC CACTGCTGCG AGCGATACCG TGCACGTGTC TAGGCTGGGC
GGTGACGAAT TCGCGCTGGT CATCAAGGGC GACACCAGTA ACGAGGCGTT ACTGATGTTC
GGCAAGCACC TTTGCACGTT GATGCATGAA AGTTTCGAAC TCTCGGAAAT ACCGATCCAG
ATCGGCGCGA CTCTGGGTTT CGCAACGTAT CCAGCTACCG CCGACAATGC TACCCAATTG
TTTGAATATG CCGACTACGC CCTTTACCAA GGCAAGAATC ACAACCCCGG GTCCACTTGC
ATATTTTCGG CCAGTCACCG TGAACAACTT AGTGCCGATG GCGTAACCGA GCAGGCATTG
CGGCGGGCGA ATCTGAAGAC GGAGTTTCAC GTTTTGTTTC AGCCGATCAT TGAAAGCTGT
ACACGCGAAA CAGTGGCTTT CGAGGCGCTG GCACGCTGGG ACAGTCCAGT ACTCGGCGCG
GTATCGCCTG CGCATTTCAT TCCGATTGCC GAGCGGATCG GCATGATCAA CGAGCTGACC
GCCCCTTTGT TAACGCAGGC GCTACAGCGA GCATTGTCCT GGCCGTCGCC GATCAGGCTG
TCGTTCAATT TGTCGGCCCA TGACTGCGCG ACCTGGGAAA GCGTCAAGAG AATTGTCGAT
ATAATCGAAA ACAGTGGTTT TGACGCCTCA CGACTTGATC TGGAAATCAC CGAAACGGCT
GTCATGCAGG ACATTGACCA GGTTCAACAG GCTATCCTCC GGTTCCGTCA GTTGGGTTGC
GGGATTTCCC TTGACGACTT TGGCACCGGT TACACTAGTC TCAGCCAGTT GCACGCCTTG
CCGCTGACCA AACTGAAGAT TGATCGCAGT TTTGTGAGGT GCGTGCATGA CAATCCGGCC
AGCTACAAGA TCGTCAAGTC GCTGGTGGCC CTAAGCCTGG ACATGTCATT AGGATGCGTG
ATCGAGGGTG TCGAGACGCA GGACGAGCTG AACGCGCTGA CGAGTCTGGG CTGCACGATG
GTCCAAGGCT ACTTCTACAG CCCGCCGATA ACGTTCGCCG AAACACTCGT GTGGATTGAG
GCGCCGGATG ACGAGCGCAC GTTTGGTTAG
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| Protein sequence | MLKKMMDALR TLMSVPSDNP RLLQAQYIAL SRQLPLMYFV LLVNTWALAF THWATAPMWL
TLLVPTVLTI GCCIRARKWL LTVNKPPPAS STILETLRGT NRLVGIISTA FAAWSLSMYP
YGDAYTQAQV AFFMGITVIV CIFCMMHLQS AALITAVIVN TAFVIFFAST HNITFIATAA
NIVLVSIGML IILRHQYRDF TSLVNAQFKT EQLSNANLML ANRDSLTGLP NRRHFFQTLD
TAMNEALLQR SGLAVGVLDL DGFKPVNDLY GHSVGDRLLM LVAERLTTAA SDTVHVSRLG
GDEFALVIKG DTSNEALLMF GKHLCTLMHE SFELSEIPIQ IGATLGFATY PATADNATQL
FEYADYALYQ GKNHNPGSTC IFSASHREQL SADGVTEQAL RRANLKTEFH VLFQPIIESC
TRETVAFEAL ARWDSPVLGA VSPAHFIPIA ERIGMINELT APLLTQALQR ALSWPSPIRL
SFNLSAHDCA TWESVKRIVD IIENSGFDAS RLDLEITETA VMQDIDQVQQ AILRFRQLGC
GISLDDFGTG YTSLSQLHAL PLTKLKIDRS FVRCVHDNPA SYKIVKSLVA LSLDMSLGCV
IEGVETQDEL NALTSLGCTM VQGYFYSPPI TFAETLVWIE APDDERTFG
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