Gene PSPTOA0030 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTOA0030 
Symbol 
ID1187320 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004633 
Strand- 
Start bp30218 
End bp30841 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content41% 
IMG OID637408363 
Productglycosy hydrolase family protein 
Protein accessionNP_808688 
Protein GI29171504 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3757] Lyzozyme M1 (1,4-beta-N-acetylmuramidase) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones43 
Plasmid unclonability p-value0.0210043 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCACAA TTAAGAAAGG TATTGATCTA TCGCATTTTC AAGGTGATAT TGATTTTAAA 
AAAGTTTTTG AGGCTGGCAT TGAGTATGCC TTTATCAAGA CAACAGAAGG CGCTACCGTA 
CAGGACAATA AATACACTAC GTATCGTACT GACGCTAGAG CCGTCGGAAT TAAAACGGGG 
GCATATCATT ACTTTCGTGC GCTCAGCAGC TCGCCGGAAG CACAACGAGA TAACATAGTT 
AGTACACTTA CTGCTGCCGG CTTCGATGCA TCTACTGAGT TTTTTGCAAT CGATGCGGAG 
CTCGAAGGTA ACGAAAAAGC TACCCCGGAC GAAATGGCTG ACAACCTTCA TAAACTGCTA 
ACTTTATTGG ATAACGAAAA AATCCTAAAG AGCCAAAAAT CATTTATATA TTGCGATAAT 
AACTTCTGGA TGAATCATAT TTTAGGAGAA AAATATGCAT TTAGTGAATA CCCTCTTTGG 
ATCGCTAATT GGGATGTCAG TGAACCTAAA GTTCCAGCTT CATGGGAGGT AGCAGGTAAA 
AGCTGGTCAA TTTGGCAGCA CAGTAACAAA GGTCGCATCG CGGGCATTGA GGTTGATGTA 
GATCTTAATT GGGTTCGTAC TTGA
 
Protein sequence
MSTIKKGIDL SHFQGDIDFK KVFEAGIEYA FIKTTEGATV QDNKYTTYRT DARAVGIKTG 
AYHYFRALSS SPEAQRDNIV STLTAAGFDA STEFFAIDAE LEGNEKATPD EMADNLHKLL 
TLLDNEKILK SQKSFIYCDN NFWMNHILGE KYAFSEYPLW IANWDVSEPK VPASWEVAGK 
SWSIWQHSNK GRIAGIEVDV DLNWVRT