Gene PSPTOA0019 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTOA0019 
SymbolhopT1-1 
ID1187368 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004633 
Strand+ 
Start bp21259 
End bp22395 
Gene Length1137 bp 
Protein Length378 aa 
Translation table11 
GC content52% 
IMG OID637408353 
Producttype III effector HopT1-1 
Protein accessionNP_808678 
Protein GI29171494 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones45 
Plasmid unclonability p-value0.212974 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAACAG TCAGCAATCA CTCGATACCC AGTACAAATC TCGTCGTGGA TGCGGGAACG 
GAAACTTCGG CGCAGAAATC CCAGCCGGTT TGCAGCGAAA TCCAGCGTAA CAGCAAGATC 
GAAAAAGCAG TCATCGAACA CATTGCCGAC CACCCGGCAG CGAAAATGAC AATAAGCGCG 
CTGGTTGACA CGTTGACAGA CGTTTTTGTC AGGGCTCATG GGGAGGTTAA GGGGTGGGCC 
GAAATCGTCC AGGCAGTCTC TCGCCCTCAT GACAGTAATC GACACGGCAG TGGAGTGCTC 
AGCCCGCGCT TTGATGTAAT GGGGAGTGTT GGTTGGAATG CGGCAGCTAT CCGGGCCACC 
AGTCGCGTCG GGACGCTTCG AGAGAAAGGT ACACTGTTCA CTAACCTTAT GCTCAGTAAC 
AACTTTAAAC ATTTGCTTAA ACGAGTGGTT AACGATCCAG CCTTGCAGCA AAAGCTCGAC 
GGTGGGTTAG ACCTCAACTA TCTGAAGGCT TGTGAAGGCG ATCTTTATGT CATGTCAGGG 
TGGGCTGCAC GGGCTAGCGA AAGTCGTGAA CAAATTGGCA AAGCCCGGTA TGAAACGGCA 
TCAAATCTTA GCCAGACGCT GATCAGTGCA CGTGAGTTGG CTTTTCATCG TCACAATCCG 
GTTAATCATC CGTCTGCCCA AACGAAAGTG GGCTTCGATA AGGGTTTGCC TGAGGAATCT 
GATCTGCAGG TTCTGAGAGG CCATGGCAGC AGTGTATGGA GTGTAAAACC GGGCAGCGAT 
TTCGCAAAGC GTGCTGAAGT TTCTGGAAAG CCTATTATCG CCGGCCCGTC CGGTACCGCT 
TCGCGCATGG TCGCTGTTGC GCGTTTTCTG GCACCGGCTT GTTTGAAAAG CCTGGGTATT 
GAGAGTGAGC AGAACCTGAA AGAGCTTGTG CGGTATGCCT GCTATGCCTA TTTCGGTCAG 
GACAGCCACC ATTCGATGCT TGAAGTGAAT CTTGGTGTCG CTTCCCATGG AATGCCGGAA 
CAATGGGACG ACACGCTTTA TAACGAGCCT TTCAGTAATT CAATTAAAGG TCGCGGGTTT 
GGTATAGACA ATCTCGCGCA TAGGCAAGTC GTCAGGCAGG CGGCTCAAAA GTCATGA
 
Protein sequence
MKTVSNHSIP STNLVVDAGT ETSAQKSQPV CSEIQRNSKI EKAVIEHIAD HPAAKMTISA 
LVDTLTDVFV RAHGEVKGWA EIVQAVSRPH DSNRHGSGVL SPRFDVMGSV GWNAAAIRAT 
SRVGTLREKG TLFTNLMLSN NFKHLLKRVV NDPALQQKLD GGLDLNYLKA CEGDLYVMSG 
WAARASESRE QIGKARYETA SNLSQTLISA RELAFHRHNP VNHPSAQTKV GFDKGLPEES 
DLQVLRGHGS SVWSVKPGSD FAKRAEVSGK PIIAGPSGTA SRMVAVARFL APACLKSLGI 
ESEQNLKELV RYACYAYFGQ DSHHSMLEVN LGVASHGMPE QWDDTLYNEP FSNSIKGRGF 
GIDNLAHRQV VRQAAQKS