Gene PSPTO_5505 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_5505 
Symbol 
ID1187197 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand+ 
Start bp6271800 
End bp6272438 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content58% 
IMG OID637396824 
Producttranscriptional regulator, putative 
Protein accessionNP_795229 
Protein GI28872610 
COG category[K] Transcription 
COG ID[COG2808] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTACATAC CCAATGCCTT CAGGGAAAGC GATACACACA ACCTTCAGGA GCACATGGAC 
AAGACTCGCC TGGCCATTCT GGTCACCCAA GGTGACGACG GCTTGCACGC GACCCACCTG 
CCGCTGCTTT TGCGTAGCGA TGAAGGCCCG TATGGCACGC TCTACGGGCA CATGGCCAAG 
GCCAACCCGC AATGGCAGCA ACTGAATGCC GACGCCGAGG CAATGGTGAT TTTCCCGGGT 
GAAGATGCCT ACGTGAGCCC GTCGTTCTAC CCGAGTAAAG CGGAACACGG CAAGGTCGTG 
CCGACCTGGA ATTATCTGGC CGTGCACGCC TATGGTCAGG CTGAGTGCTT CACCGATCCC 
GACCGGCTGC ATCAACTGCT CAATGACCTC ACCGATCGGC ACGAGTCCAG TCGCGCCCAA 
CCGTGGTCGA TCAACGATGC GCCCGCGGAC TACATTGCAA AGATGCTCGG CGCCATTGTC 
GGGTTTTCCA TTCCCGTGCA GCGCCTGCAA GGTAAACGCA AACTCAGCCA GAACCGCAGC 
GCTGAGGATA TGGCCGGTGT ACGCGACGGT CTTGGCGCAA GCCATCTTGC AAATGACCAA 
CAAATCGCTC GCTTGATGAG CGGATGGAGA CCTTCATGA
 
Protein sequence
MYIPNAFRES DTHNLQEHMD KTRLAILVTQ GDDGLHATHL PLLLRSDEGP YGTLYGHMAK 
ANPQWQQLNA DAEAMVIFPG EDAYVSPSFY PSKAEHGKVV PTWNYLAVHA YGQAECFTDP 
DRLHQLLNDL TDRHESSRAQ PWSINDAPAD YIAKMLGAIV GFSIPVQRLQ GKRKLSQNRS 
AEDMAGVRDG LGASHLANDQ QIARLMSGWR PS