Gene PSPTO_5504 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_5504 
Symbol 
ID1187196 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp6270147 
End bp6271709 
Gene Length1563 bp 
Protein Length520 aa 
Translation table11 
GC content61% 
IMG OID637396823 
Producttranscriptional regulator, GntR family 
Protein accessionNP_795228 
Protein GI28872609 
COG category[K] Transcription
[E] Amino acid transport and metabolism 
COG ID[COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCGGCAG ACCGCGTTGC GTTTCCACCC ACGCTTATCG GTATCGAACT GGACCCACGC 
CAAGGTCTTA GCAAGCAGCT GTATGAAATT CTGCGTCGGC AAATCCTCGA CGGACGCCTG
AGCAGCGGCA TGCGCCTGCC TGCCAGCCGG GATCTGGCAA AATCGCTGGC GATTTCTCGC
AACAGCGTGA TGCGCGCCTT CGATCAGCTA TACGCCGAAG GTTTCATTGA AGGGCGCGTT
GGCGATGGCA CATACGTCGC GCAACTGGCC GGACGTCACG CTGCGCTTCA GCGCAATGCT
CCCGGAAAAC TATCCACCAA CTTACCCACA GGTTTGCACA CAGGGTTATG CACAGGTTTG
TCCACATTTG CGGTTGAAAA CACGCAGAAT CTGCTGAATC AAGTTATCCA CAACCCCGCG
CTGCAACGGG TTGAAAAGCA CCACCTCAAT GAGCCCCCGG ATGACCGGCC CAAGGCCTTT
AGGGTCGGGG TTCCCGCGTT TGACCTTTTC CCGTTCGCCT TGTGGGGCAA GCTGTATGCG
TCTTTTTGGC GCAAGCCAAA TCTCGATCAA CTGGGCTATG GCGCTGCGGC GGGAGAGTGG
CGGCTGCGAG AGCTGGTTGC GGCGTATCTT CGCTCCTCGC GAGGGCTGGG CTGTACTGCT
GAGCAAATTG TGATCACCAG TGGCGCGCAG CACGCAATCA GCCTTTGTGC ACAGCTGCTG
GTGACGCCAG GCGAGGGCGT TGCAGTGGAA AATCCGGGCT ATCGCGCGGC AGGTCACGCG
TTCGCACTGG CTGGTGCGCG GTTGCAGGGT GTAGCGGTGG ACAGCGAGGG TATGCGTTGC
GCCGACCTTG AGCAGACGGA CTGTCGGCTG GCGTACGTTA CGCCTTCGCA TCAATACCCT
ACAGGCGTGG TCATGAGCCT GGCCCGGCGT CTGGAGTTGC TGGCCTGGGC CGAGAAAAAC
CAGAGCTGGA TCGTCGAGGA CGATTACGAC GGCGAGTACC GCTACAGCGG GTCGCCCTTG
GCACCCTTGG CTGCGCTCGA TCAGAACGGG CGAGTGCTTT ACGTCGGGAC GTTCGGCAAG
ATTGTTTTCC CGGCGCTGCG CCTGGGCTAT CTGGTGCTGC CCGAGCATCT GGTGCGTCCG
TTCAGCCAGC GCAAGGCGGT GGACATGCGC CATACCGAGA TCGGCGTGCA GGCGGTCATG
GCGCAATTCA TTGCCCAAGG GCATTTTCAG CGACACATCC GCCGCATGCG TCGTGCGGCC
CTGAGTCGTC GTGATGCGCT GCTGGCCGGC TGGCCTGACA ACGTTCCCGG CTGCGCGGCA
ATGCCCAAAG TCGTGGCGGG CCTGCACGTA ATGGTCAAGG TCGACAGCGT TGCGCGCGAG
CAAGCGTTGA TTGCCAAAGC CAGAAGCGTT GGCGTCGAGA TGAGCCCATT GAGTGGATAC
TGGCTGTCCG ATTCCGACGA GCCTGTGGAT AACCGTGCCG GTCTGGTGCT TGGGTTCGCC
GCTGTGCCTG AGCCCGCCAT CGCGGATGCG TTGAACAGGC TACGCATGGT CTGGTCGGAG
TAG
 
Protein sequence
MPADRVAFPP TLIGIELDPR QGLSKQLYEI LRRQILDGRL SSGMRLPASR DLAKSLAISR 
NSVMRAFDQL YAEGFIEGRV GDGTYVAQLA GRHAALQRNA PGKLSTNLPT GLHTGLCTGL
STFAVENTQN LLNQVIHNPA LQRVEKHHLN EPPDDRPKAF RVGVPAFDLF PFALWGKLYA
SFWRKPNLDQ LGYGAAAGEW RLRELVAAYL RSSRGLGCTA EQIVITSGAQ HAISLCAQLL
VTPGEGVAVE NPGYRAAGHA FALAGARLQG VAVDSEGMRC ADLEQTDCRL AYVTPSHQYP
TGVVMSLARR LELLAWAEKN QSWIVEDDYD GEYRYSGSPL APLAALDQNG RVLYVGTFGK
IVFPALRLGY LVLPEHLVRP FSQRKAVDMR HTEIGVQAVM AQFIAQGHFQ RHIRRMRRAA
LSRRDALLAG WPDNVPGCAA MPKVVAGLHV MVKVDSVARE QALIAKARSV GVEMSPLSGY
WLSDSDEPVD NRAGLVLGFA AVPEPAIADA LNRLRMVWSE