Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_5460 |
Symbol | |
ID | 1187152 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 6219738 |
End bp | 6220958 |
Gene Length | 1221 bp |
Protein Length | 406 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637396780 |
Product | CAIB/BAIF family protein |
Protein accession | NP_795185 |
Protein GI | 28872566 |
COG category | [C] Energy production and conversion |
COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0019674 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGGTGCGC TTTCACATAT AAGAGTGCTC GATCTTTCGC GTGTTCTGGC CGGACCCTGG GCCGGGCAGA TCCTTGCTGA TCTGGGCGCT GACGTCATCA AGGTCGAGCG TCCGGGCTGT GGCGATGACA CTCGCGCCTG GGGGCCTCCG TTTCTTAAGG ATGCGGCCGG GCATAACACC AGTGAGGCGG CTTATTACCT GTCGGCCAAT CGTAACAAGC AGTCGGTCAC CATCGACTTC ACGCGACCTG AAGGGCAGAA GCTGGTCAGG GAGCTGGCGG CGAAGTCCGA TATCGTCATA GAAAACTTCA AGGTTGGTGG GTTGGCGGCG CATGGCCTGG ATTACGCGTC GCTCAAGGCA ATCAACCCCC GACTGATCTA TTGCTCCATT ACCGGTTTCG GTCAAAGCGG TCCATATGCG ACTCGTCCGG GTTACGACTT CATGATTCAG GCGCTTGGCG GTCTGATGAG CCTTACCGGT TTGCCGGGGG GCGAGGAAGG TGCAGGTCCG GTGAAGGTCG GCGTCGCGCT GACCGACATT CTGACCGGCC TGTATTCAAC GACCGCAATC CTTGCAGCTC TGGCTCATCG CGATCAAAGC GATGTAGGGC AGCATATTGA TATGGCGTTG CTGGACGTAC AGGTGGCCTG CCTGGCCAAT CAGGCCATGA ACTACCTGAC TACCGGGGTC GCACCAGAGC GTCTGGGCAA TGCCCATCCC AATATCGTGC CCTATCAGAG TTTTCCGACT GCCGATGGCG ACCTTATCCT TACGGTGGGT AACGACAGTC AGTTCAGGAA GTTTGCCGAA GTGGCGGGGC AGTCGCAGTG GGCAGATGAT CCGCGTTTTC TGACCAACAC GCTGCGAGTT GCTCATCGTG CTGAACTGAT CCCGCTGATT CGGCAGGTGA CGGTTTTCAA GGCGACCGCT CAGTGGGTGG CCGTACTGGA GGCTGTGGGT GTGCCGTGCG CCCCGGTCAA TGATCTGGCC AAGGTGTTTG CCGATCCGCA AGTTGTGGCA CGCGGGTTGG CGATTGAGCT GCCCCATGCA CTGGGTGGCA AGGTCCCGCA GGTTGCCAGC CCGATTCGTT TGTCCGAGAC GCCGGTTGAA TACCGCAGGG CGCCGCCTAT GCTGGGCGAA CATACAGCTG TGGTACTGGA GGAGCTTCTC GGTTTGGGCG GTGATGAGGT TGCATCGCTG CGAGCGGCAG GTGTGCTGTA G
|
Protein sequence | MGALSHIRVL DLSRVLAGPW AGQILADLGA DVIKVERPGC GDDTRAWGPP FLKDAAGHNT SEAAYYLSAN RNKQSVTIDF TRPEGQKLVR ELAAKSDIVI ENFKVGGLAA HGLDYASLKA INPRLIYCSI TGFGQSGPYA TRPGYDFMIQ ALGGLMSLTG LPGGEEGAGP VKVGVALTDI LTGLYSTTAI LAALAHRDQS DVGQHIDMAL LDVQVACLAN QAMNYLTTGV APERLGNAHP NIVPYQSFPT ADGDLILTVG NDSQFRKFAE VAGQSQWADD PRFLTNTLRV AHRAELIPLI RQVTVFKATA QWVAVLEAVG VPCAPVNDLA KVFADPQVVA RGLAIELPHA LGGKVPQVAS PIRLSETPVE YRRAPPMLGE HTAVVLEELL GLGGDEVASL RAAGVL
|
| |