| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5452 |
|---|
| Symbol | |
|---|
| ID | 1187139 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 6204261 |
|---|
| End bp | 6204899 |
|---|
| Gene Length | 639 bp |
|---|
| Protein Length | 212 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637396767 |
|---|
| Product | HAD-superfamily hydrolase |
|---|
| Protein accession | NP_795177 |
|---|
| Protein GI | 28872558 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0637] Predicted phosphatase/phosphohexomutase |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATGGCC TGCTGCTGGA CACTGAGGGT GTGTACACGG AGGTCACACA CCTGATTGCC
AGTCGCCACG GTCGAACTTT CGACTGGTCA ATCAAGCAGC ACACCATCGG CCGCGGTGCC
CGGGATTTCT CGGATTACGT GATCAAGGCG CTTGAACTGC CGATGTCGAT CGACGAATTT
CTCGAAATCC GCGAGCCGAT GCTCGACGAG CGTTTCCCCA AAGCCCCGGC AATGCCCGGA
GCCGAAGCGC TGGTCCGCCA TCTGGCCGCC CACAATATCC CCATCGCCGT GGGTACCAGT
TCGTCGGTGC ATTACTTTCA GGCCAAGACG ACGCAGCACC GCGCCTGGTT TGAACTGTTC
GACACCATCG TGACTGCCGA TGACCCGGAA GTCGGCGCAG CCAAACCGGC TCCGGACATC
TTTCTGGTCG CCGCGCGCCG GCTTGGCGTT GCGCCGGCCG ATTGCCTGGT CTTCGAAGAC
TCACCGTTCG GCGTAACGGC AGCCAAGGCT GCCGGGATGT ACGCCGTGGC GGTGCCGGAC
TCGCACATGC CGGTCGAGCA ATACGAGCAC GCGGATCTGC TGCTAGCCTC ACTGGCCGAC
TTCCCGCTCA AAGCGTGGGG GCTGCCTGAA CTCGTTTGA
|
|---|
| Protein sequence | MDGLLLDTEG VYTEVTHLIA SRHGRTFDWS IKQHTIGRGA RDFSDYVIKA LELPMSIDEF
LEIREPMLDE RFPKAPAMPG AEALVRHLAA HNIPIAVGTS SSVHYFQAKT TQHRAWFELF
DTIVTADDPE VGAAKPAPDI FLVAARRLGV APADCLVFED SPFGVTAAKA AGMYAVAVPD
SHMPVEQYEH ADLLLASLAD FPLKAWGLPE LV
|
|---|
| |