| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5436 |
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| Symbol | |
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| ID | 1187123 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 6181756 |
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| End bp | 6183798 |
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| Gene Length | 2043 bp |
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| Protein Length | 680 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637396753 |
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| Product | Rhs element Vgr protein |
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| Protein accession | NP_795163 |
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| Protein GI | 28872544 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCGCGC CGGCCAATCA GACTCACTTT TCCCTGACCA TAGAAGGTCT TTCCAATGAT
CTGCAGGTTC TTGCCTTGCA AGGTCGGGAA GCCATCAGCC AGCCTTTTGC GTTTGAGGTC
GATCTGGTCA GTGAGCAGCC ATCCCTGGAC CTCGAAACGC TGCTACATAA ACCGGCCTTT
CTGCAGCTCT CGCCTGACGG CAGCGGCATT CATGGCCAGA TTTACCGCGC CTCACAGGGC
GACTCGGGCA AGCGGCTAAC CCGCTACGCC GTGACCTTAC GCCCGCAACT GGCCTACCTT
GCCCACCGTA CCAACCAGCG TATCTTCCAG AACCTCACCG TCCCGAAAAT CATCGGTATT
GTTCTCGAAG AGCACGGCAT TCAAGGCAAC GCCTACGAAT TCAAAGTCGG GTCGATTTAT
CCTGAACGCA TCTACTGCGT TCAATACGAT GAATCGGATC TGCACTTCGT CCAACGGCTG
TGCGAGGAAG AAGGTATCCA CTACCATTTC CAGCACAGCA CCAACGGCCA CACACTGGTG
TTCGGCGATG ACCAGACGGT GTTCCCGAAA CTTGCACCAG TGGCCTACCA GCAAGACTCA
GGCATGGTCG CCACCGATCC GGTGGTAAAG CGATTCGACC TGCGCATGGA AACCCGCACT
AGCCGCACGA CACGCCGCGA CTACGACTTC GAGAAACCGC GCCTGACGCT GGAAAGCGAA
AACCGGGGCG ATGCCATCCC CGACCTTGAA GACTACGACT ACCCTGGCCG CTTCGTGGAT
CGCGAACGCG GCAAGCAACT GGCCAAAAGA GCACTGGAAC GTCATCGCAG CGACTACCAA
CTGGCCGTAG GCAAGAGCGA TCAGCCGCTG CTGGTCAGCG GCCACTTTCT GGCGCTGACC
CAGCACCCCA AAGCCAAATG GAACGATCTG TGGCTGCTGA CCGAAATCCT GCACGAAGGC
AAACAGCCGC AGGTGCTGGA GGAGTCGGTC ACCAGCGACA CAACCGACCT GAAGGATGAT
TTCCATCAGG GCTACCGCAA CCGCTTCCAG GCCACCCCGT GGGACGTGCC CAACCGTCCG
CCGCTGACCC ACCCCAAACC GCGCATTCTC GGCAGCCAAA GTGCCGTGGT CACCGGCCCC
AAAGGCGAAG AAATCCACTG CGATCAGTAC GGCCGCGTCA AAGTGCAGTT CCCCTGGGAC
CGCGAAGGCC AGTCCGACGA CAAGACCAGC TGCTGGCTGA GGGTCTCCTC GGCCTGGGCA
GGTGCGATGT ACGGCGGCAT CGCCATTCCG CGCATCGGCA TGGAAGTGCT GGTGACTTTC
CTTGAAGGCG ACCCCGATCA GCCGCTGATC AGTGGCTGCC TGTACCACAA GGAAAACGTG
GTTCCGTACG ACCTGCCGGC TAACAAAACC CGCAGCACTT TCAAGTCCAT GAGTTCACCC
GGTGGCGGCG GCTTCAACGA GCTGCGTATC GAAGACAAGA AAGGCCAGGA ACAGATATTC
CTGCACGCCC AGCGCGACTG GGACGAGAAC GTCGAGAACG ATCAGAAGAT ACGCGTCGGC
AACGAACGAC ACGACACAGT CGAGCAGAAC AGCCACAGCG AATTCAAGGC CGAAGAGCAC
CATACCGTCT ACGCCGACCG CAAAGTCGAA GCACGGGCTG ACGATCACCT CACCGTAGGT
GCGAACCAGC ACGTCAAGGT CGGCACCGGT CAGTTCATCG AAGCAGGCCA AGAGATCCAC
CTGAGCAGCG GCGTGAAAGT GGTGCTTGAA GCCGGTAGCG AATTGACCCT TAAGGCTGGG
GGCAGCTTCA TCAAGATCGA CGCCAGCGGC GTGACCCTGA GCGGCCCGTT CATCCACGTC
AACGACGGCG GTAGCCCCGG CAACGGCACC CCGGCAGCCC CGCTGATGCC GGGTCCTTTG
CTGCAGGCCG ATGCCGACAA GGCCGGTGCG GCTCTAACCC CGGCGCAGAT CAACACCCTC
AAACGCAACG CGCCGTTCTG TGAAGAATGC GAGAAGTGCA AGGACGGTGC GTGTGCGATC
TGA
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| Protein sequence | MFAPANQTHF SLTIEGLSND LQVLALQGRE AISQPFAFEV DLVSEQPSLD LETLLHKPAF
LQLSPDGSGI HGQIYRASQG DSGKRLTRYA VTLRPQLAYL AHRTNQRIFQ NLTVPKIIGI
VLEEHGIQGN AYEFKVGSIY PERIYCVQYD ESDLHFVQRL CEEEGIHYHF QHSTNGHTLV
FGDDQTVFPK LAPVAYQQDS GMVATDPVVK RFDLRMETRT SRTTRRDYDF EKPRLTLESE
NRGDAIPDLE DYDYPGRFVD RERGKQLAKR ALERHRSDYQ LAVGKSDQPL LVSGHFLALT
QHPKAKWNDL WLLTEILHEG KQPQVLEESV TSDTTDLKDD FHQGYRNRFQ ATPWDVPNRP
PLTHPKPRIL GSQSAVVTGP KGEEIHCDQY GRVKVQFPWD REGQSDDKTS CWLRVSSAWA
GAMYGGIAIP RIGMEVLVTF LEGDPDQPLI SGCLYHKENV VPYDLPANKT RSTFKSMSSP
GGGGFNELRI EDKKGQEQIF LHAQRDWDEN VENDQKIRVG NERHDTVEQN SHSEFKAEEH
HTVYADRKVE ARADDHLTVG ANQHVKVGTG QFIEAGQEIH LSSGVKVVLE AGSELTLKAG
GSFIKIDASG VTLSGPFIHV NDGGSPGNGT PAAPLMPGPL LQADADKAGA ALTPAQINTL
KRNAPFCEEC EKCKDGACAI
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