| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5432 |
|---|
| Symbol | |
|---|
| ID | 1187119 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 6176718 |
|---|
| End bp | 6178196 |
|---|
| Gene Length | 1479 bp |
|---|
| Protein Length | 492 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637396749 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_795159 |
|---|
| Protein GI | 28872540 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3517] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03355] type VI secretion protein, EvpB/VC_A0108 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.682692 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAAGCA ATAGCTCAGC AAAGCAAAAA AGCGTTGAGA CAAGCGAACA CAGTATTCTC
GACAGCATCA TTGCCCAGAC CAGTCTGACG CGTGACGACG AAGCCTATGA CATCGCCAAG
CGTGGCGTAT CGGCCTTCAT TGAAGAGCTG CTAAAGCCGC AGAACAACGG TGAGCCGGTC
AAGAAGGCAA TGGTCGACCG CATGATCGCC GAGATCGATG CCAAGCTCAG CCGCCAGATG
GACGAAATCC TGCACCACCC AGACTTCCAG TCCCTGGAAT CGTCGTGGCG TGGCCTGCAG
TTGTTGGTCG ATCGCACCAA CTTCCGTGAA AACATCAAGA TCGAAATCCT CAACGTCTCC
AAAGATGATT TGCTGGAAGA CTTCGAAGAC TCGCCGGAAG TGATGCAGTC GGGCCTGTAC
AAGCACATCT ACACCGCAGA ATACGGCCAG TTCGGTGGTC AGCCAGTGGG CGCGATCATC
GCCAACTACT TCATGTCTCC AAGCTCGCCT GACGTGAAAC TCATGCAGTA CGTATCTAGC
GTAGCCTGCA TGTCTCATGC ACCGTTCATT GCTGCTGCCG GCCCGAAATT CTTCGGTCTG
GAGAGCTTCA CTGGCTTGCC GGACCTGAAA GATCTGAAGG ATCACTTCGA AGGCCCGCAG
TTCGCAAAAT GGCAGAGCTT CCGCCAGTCG GAAGATTCCC GTTACGTCGG CCTGACCGTT
CCGCGCTTCT TGCTGCGCAA TCCGTACGAC CCGCAGGAAA ACCCCGTCAA GTCATTCGTG
TACAAGGAAA CCGTCGCCAA CAGCCACGAG CATTATCTGT GGGGCAACAC GGCTTACGCG
TTCGGCACCA AGCTGACCGA CAGTTTCGCC AAGTTCCGCT GGTGCCCGAA CATCATCGGC
CCGCAGAGCG GCGGTGCAGT TGAAGACCTG CCGTTGCACC ATTTCGAAAG CATGGGCGAA
ATCGAGACCA AGATCCCTAC CGAGGTTCTG GTCAGCGACC GTCGTGAATA CGAACTGGCT
GAGGAAGGCT TCATCTCCCT GACCATGCGT AAGGGCAGCG ACAACGCGGC GTTCTTCTCC
GCCAGTTCCG TGCAGAAGCC GAAGTTCTTC GGTAACAGCG CTGAAGGCAA GGCTGCAGAG
CTGAACTACA AGCTGGGCAC CCAGCTGCCG TACATGATGA TCGTCAACCG CCTGGCTCAC
TACTTGAAAG TGCTGCAGCG CGAGCAACTC GGTTCGTGGA AAGAGCGTAC CGATCTCGAG
CTGGAACTGA ACAAGTGGAT CCGCCAGTAC GTCGCAGATC AGGAGAACCC GAGCGCCGAA
GTGCGCGGCC GTCGCCCGTT GCGCGCTGCC CAGATTACCG TCAGCGACGT CGAAGGTGAA
CCTGGCTGGT ACCGCGTCAG CCTGAACGTG CGCCCGCACT TCAAATACAT GGGTGCTGAT
TTCACCCTGT CGCTGGTTGG CAAGCTGGAC AAAGAGTAA
|
|---|
| Protein sequence | MPSNSSAKQK SVETSEHSIL DSIIAQTSLT RDDEAYDIAK RGVSAFIEEL LKPQNNGEPV
KKAMVDRMIA EIDAKLSRQM DEILHHPDFQ SLESSWRGLQ LLVDRTNFRE NIKIEILNVS
KDDLLEDFED SPEVMQSGLY KHIYTAEYGQ FGGQPVGAII ANYFMSPSSP DVKLMQYVSS
VACMSHAPFI AAAGPKFFGL ESFTGLPDLK DLKDHFEGPQ FAKWQSFRQS EDSRYVGLTV
PRFLLRNPYD PQENPVKSFV YKETVANSHE HYLWGNTAYA FGTKLTDSFA KFRWCPNIIG
PQSGGAVEDL PLHHFESMGE IETKIPTEVL VSDRREYELA EEGFISLTMR KGSDNAAFFS
ASSVQKPKFF GNSAEGKAAE LNYKLGTQLP YMMIVNRLAH YLKVLQREQL GSWKERTDLE
LELNKWIRQY VADQENPSAE VRGRRPLRAA QITVSDVEGE PGWYRVSLNV RPHFKYMGAD
FTLSLVGKLD KE
|
|---|
| |