| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5424 |
|---|
| Symbol | |
|---|
| ID | 1187111 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 6165047 |
|---|
| End bp | 6166564 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637396741 |
|---|
| Product | sigma-54 dependent transcriptional regulator |
|---|
| Protein accession | NP_795151 |
|---|
| Protein GI | 28872532 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCACTC AGATGCCGCA GCCTCTGGCA TATGCCCAAG CCTTGTTGGC GCAATTCGCC
AGCTTGGCGC GGGCGGTGAA TGGTGCCCAA TTGCTGGGTG ATTTTGTACG TAGCCTCGCT
GAGCTCAGCG GCTGCGAGCT GTCGCAGCTT TATCTGCTGG ACGCCACTCA TAAGTGTTTG
AAGATGAGAG CCGAGTGCCT GGACGGCACG CTGCAACCGC GGGAAGCGGC AAGCCTGCCG
GTGGATTACA ACGGCGAACA GCTGTTGCAA TTTGCCCTTT GTCAGAATCG TGTGGTTTGC
CTTGGCGAAC TGAGCGGCAG CCTGCACGAA ACCAGTTTTC TGCCGACGCA AAGTACGCCG
TGGCAGTCGC TGCTTTGTGT CCCGGTCGTC AACCATCAGC AAGCCGTCGA AGGCTTGTTG
TTGTGCGCAA GTCGCCGACA TGTCGATCTG CAGGGTTTTG CTGATTCTCT CGGTCAGTTC
GGCTCGTTCG CACTGGGTCA ACTCAACCTG CTGCAACGTT TGCATAAGCC TGCGGATGAG
GTACGACCGG CAGGGATCAC TATGCCAAGC GTCAGCGGAT ACGGTTTGAT CGGAAAAAGC
GCAAGCATGC GTCAGACCTA CACGATGATC AGCAAGGTGC TGCACAGCCC GTACACTGTG
TTGCTGCGGG GAGAGACAGG CACCGGCAAA GAAGTCGTTG CCCGGGCGAT TCACGACTTC
GGTCCGCGTC GCTCTCAGCC TTTCATTGTT CAGAACTGTG CGGCATTTCC AGAGCACCTG
CTTGAAAGCG AGCTTTTCGG CTATCGCAAA GGAGCCTTTA CAGGTGCCGA CAGTGATCGT
ACCGGGCTGT TCGAGGCTGC CAATGGCGGC ACACTGTTGC TCGACGAAAT CGGCGACATT
CCCCTGCCGC TGCAAGCCAA GCTGCTGCGC GTGCTGCAAG AGGGCGAGAT TCGCCCATTG
GGTTGCAACG ATACGCGCAA GATCGACGTG CGTATTCTTG CAGCAACGCA TCGTGACCTG
TCGGCGATGG TCAGCGAAGG CAAATTCCGC GAGGACTTGT ATTACCGTCT TGCGCAATTT
CCCATTGAGC TGCCTGCCCT GCGCAATCGA GAGGGTGACA TTCTCGACCT GGCGCGGCAC
TTCGTCGACA AGACGTGTGC GTTCTTGCAA CGTAGCCCTT TGCGCTGGTC GGACGCAGCT
CTTGATCTCC TGTCCGGTTA TACGTTTCCC GGCAATGTGC GCGAACTCAA AGGCCTGGTC
GAGCGTGCTG TCCTGCTCTG CGAGGGCAGC GAGTTGCTTG TGGAGCATTT CTCTCTGCGC
CCGGAAGTTG TGCCTGAAGG CAGCAGCCTC AATCTGCGCG AGCGGCTGGA GCAGGTGGAG
CGCAGCCTGT TGCTTGATTG CCTGCGCAAG AACGACGGCA ACCAGACTCT TTCCGCGCGT
GAACTCGGCC TGCCGAGGCG CACGCTGCTT TACCGTTTGG GACGCCTGAA TATCAACCTG
GGTGACTTAA ATGGTTAG
|
|---|
| Protein sequence | MFTQMPQPLA YAQALLAQFA SLARAVNGAQ LLGDFVRSLA ELSGCELSQL YLLDATHKCL
KMRAECLDGT LQPREAASLP VDYNGEQLLQ FALCQNRVVC LGELSGSLHE TSFLPTQSTP
WQSLLCVPVV NHQQAVEGLL LCASRRHVDL QGFADSLGQF GSFALGQLNL LQRLHKPADE
VRPAGITMPS VSGYGLIGKS ASMRQTYTMI SKVLHSPYTV LLRGETGTGK EVVARAIHDF
GPRRSQPFIV QNCAAFPEHL LESELFGYRK GAFTGADSDR TGLFEAANGG TLLLDEIGDI
PLPLQAKLLR VLQEGEIRPL GCNDTRKIDV RILAATHRDL SAMVSEGKFR EDLYYRLAQF
PIELPALRNR EGDILDLARH FVDKTCAFLQ RSPLRWSDAA LDLLSGYTFP GNVRELKGLV
ERAVLLCEGS ELLVEHFSLR PEVVPEGSSL NLRERLEQVE RSLLLDCLRK NDGNQTLSAR
ELGLPRRTLL YRLGRLNINL GDLNG
|
|---|
| |