| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5415 |
|---|
| Symbol | |
|---|
| ID | 1187102 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 6153553 |
|---|
| End bp | 6155589 |
|---|
| Gene Length | 2037 bp |
|---|
| Protein Length | 678 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637396732 |
|---|
| Product | Rhs element Vgr protein |
|---|
| Protein accession | NP_795142 |
|---|
| Protein GI | 28872523 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAATC CTTCTAACGA AACGCACTTC AGTCTGACCG TCAAAGATTT TTCAGGCGAC
CTGCAAGTGT TGTCGTTTAC AGGTACTGAA GGCATCAGCC AACCGTTCAG TTTCGACCTG
GAGCTGGTCA GCGAAAACCC CGACATCGAT CTGGAGACGC TTTTGCACAA GCAGGCGTTT
CTGGCGTTCG ATCCCCAGGG GAATGGCATC CACGGGCAGA TCTACCGCGT TGCCCAAGGC
GACGCTGGCA AGCGCCTGAC GCGTTACACC CTGTCTTTGG TACCGCAGTT GCAGTACCTG
CATCATCGTA CCAACCAGCG TATCTATCAG CAGATGTCGG CGCAGCAAAT CATCGCGCTG
ATCCTGGAAG AGCATGGCAT CAAGAGTAAC GGCTACAGCT TTCAGCTCGG CCAGCCATGC
CCGGCGCGCG ATTACTGCGT GCAATACGAT GAAACCGATC TGCACTTCGT CCAGAGGCTG
TGCGAGGAAG AGGGGGTTCA CTACCACTTC CAGCACAGCC AGGAAGGGCA TGTGCTGGTC
TTCGGCGATG ACCAAACGGT CTTCCCCAAG CTGAGTGGGC CCACGGCGTA TGTGCAAGGC
AGCGGCCTGG TCGCTGACGT GCCGGTCATC AAGGGATTCC AACTGCGTCT GGAAACCCGC
ACAGGCCGTG TGACCCGACG CGACTACGAC TTCGAGAAGC CGAAACTGCA ACTTGAAGCC
GCTTACAAAC CTGCCAACGA AAGTAACGAG CCGGACCTGG AGGATTATGA CTACCCAGGC
CGCTTCGTCG ATCGCGCGCG GGGCAAGTTC CTCAGCCAGC GTGCGCTGGA ACGTCATCGT
GCCGATTATC AGCAAGCCGA AGGCTGGGGC GATCAGACCG CGCTCAAGAG TGGGCATTTT
CTTCCGTTAT CCGAGCACCC TCGCGCGGAG TGGAACGACT TGTGGCTGCT GACTGAAATC
GTCCATGAAG GCAAACAGCC GCAAGTGTTG GAAGAGTCGG TCACTAGCGA CACCACCAAC
AACAAGGACG ACTTCCACCA CGGCTATCGC AACCGATTCC TGGCAACCCC GTGGGCGGTT
TTATATCGCC CGGCGCTGAA CCACCCCAAG CCTCGGGTAC TCGGCAGCCA AACCGCCGTG
GTCACCGGCC CCAAGGGTGA AGAAATCCAC TGCGACCAGT ATGGCCGCGT GAAAGTGCAG
TTTTTCTGGG ACCGCGAAGG CCTGGCCGAT GACAAGACCA GTTGCTGGCT GCGCGTCTCC
AGCGGGTGGG CGGGCGACCG CTACGGCGGC ATCAGCATCC CGCGCGTAGG TATGGAAGTG
CTGGTGTCAT TCCTTGAGGG CGACCCGGAC CAACCGCTGG TGACCGGCTG CCTGTACCAC
AAGGAAAACC AGGTGCCGTA CCCGCTGCCG ACCAACAAGA CCCGCACAGT ATTCAAGACC
TTCAGTTCCC CTGGCGGTGG CGGCTACAAC GAACTGCGCA TCGAAGATAA AAAAGGCGCC
GAACAGATTT TCATCCATGC CCAGCGGGAC TGGGACGAAA ACATCGAAAA CGACCAGAAA
ATCCGCGTTG GCAACGAACG CCACGACACG GTCGAAAAGA ACACCTACAC CGAGCTGAAA
GCCGAAGAAC ACCGCACCAC CCACGCCGAC CGCAAGACCG AAGTCCGCAT GGACGACCAC
CTGACGGTTG CGCAGAACCA GCACGTGAAA CTGGGCACCG CGCAACTGAC CAGCGCAGGC
ACCGAGATTC ACTTGAAGGC GGGCGAAAAG ATTGTTATCG AGGCGGGCGT GGAGCTCACC
GTGAAGGCGG GCGGGAGCTT CATCAAGCTC GACGCGGGCG GGATAACCAT GATCGGTCCG
ATCGCGAACG TCAACGCTGG AGGCTCCGCC GGAACCGGCA CCGGGATTGG CATCAAGCCG
CCTAGATTGC CGGGGGTTGT GGATCAGGAC AAGGCGGGGA GTTTGATGGA TCCGGCGTTG
GTGAATGCAC CGCCTGAGAA AGTTGAACCG AAGGCTGTTT TTGTGTTTTC TGAGTGA
|
|---|
| Protein sequence | MFNPSNETHF SLTVKDFSGD LQVLSFTGTE GISQPFSFDL ELVSENPDID LETLLHKQAF
LAFDPQGNGI HGQIYRVAQG DAGKRLTRYT LSLVPQLQYL HHRTNQRIYQ QMSAQQIIAL
ILEEHGIKSN GYSFQLGQPC PARDYCVQYD ETDLHFVQRL CEEEGVHYHF QHSQEGHVLV
FGDDQTVFPK LSGPTAYVQG SGLVADVPVI KGFQLRLETR TGRVTRRDYD FEKPKLQLEA
AYKPANESNE PDLEDYDYPG RFVDRARGKF LSQRALERHR ADYQQAEGWG DQTALKSGHF
LPLSEHPRAE WNDLWLLTEI VHEGKQPQVL EESVTSDTTN NKDDFHHGYR NRFLATPWAV
LYRPALNHPK PRVLGSQTAV VTGPKGEEIH CDQYGRVKVQ FFWDREGLAD DKTSCWLRVS
SGWAGDRYGG ISIPRVGMEV LVSFLEGDPD QPLVTGCLYH KENQVPYPLP TNKTRTVFKT
FSSPGGGGYN ELRIEDKKGA EQIFIHAQRD WDENIENDQK IRVGNERHDT VEKNTYTELK
AEEHRTTHAD RKTEVRMDDH LTVAQNQHVK LGTAQLTSAG TEIHLKAGEK IVIEAGVELT
VKAGGSFIKL DAGGITMIGP IANVNAGGSA GTGTGIGIKP PRLPGVVDQD KAGSLMDPAL
VNAPPEKVEP KAVFVFSE
|
|---|
| |