Gene PSPTO_5397 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_5397 
SymbolrfbC-2 
ID1187084 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand+ 
Start bp6129606 
End bp6130151 
Gene Length546 bp 
Protein Length181 aa 
Translation table11 
GC content59% 
IMG OID637396714 
ProductdTDP-4-dehydrorhamnose 3,5-epimerase 
Protein accessionNP_795124 
Protein GI28872505 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 
TIGRFAM ID[TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAACGTAG TAGCCACACA ACTGCCGGAA GTCCTGATTC TGGAGCCCAA GGTATTCGGT 
GATGAACGAG GCTTCTTCTA TGAAAGCTTC AACGCAAGGG CCTTTCAGGA AGCCACTGGC 
CTGACCCGGC AGTTTGTACA GGACAATCAC TCGCGCTCGC AACGAGGCGT ACTGCGCGGC 
CTGCATTATC AGATCGAAAA CGCGCAGGGC AAGCTGGTGC GCGTCACTGT CGGCAAAGTG 
CTGGATGTGG CTGTGGACAT CCGCCGCAGT TCGCCGAACT TCGGGCGGTG GGTCGGCGTC 
GAGCTGTCCG CTGAAAACGC CCGTCAGTTG TGGGTTCCGG AAGGGTTTGC GCATGGTTTC 
GTGGTGCTCA GCGAGCATGC CGAGTTCCTT TACAAGACCA CCGACTACTA CACGCCTTCG 
GCCGAGCGCT GTATCGCCTG GAACGACCCT GACCTGGCGA TCGACTGGCA GTTCGACGGC 
GAGCCCAGCC TGTCAGCCAA GGATCAGCAA GGCAAAAGCC TGAAAGACGC CGATCTGTTT 
TCCTGA
 
Protein sequence
MNVVATQLPE VLILEPKVFG DERGFFYESF NARAFQEATG LTRQFVQDNH SRSQRGVLRG 
LHYQIENAQG KLVRVTVGKV LDVAVDIRRS SPNFGRWVGV ELSAENARQL WVPEGFAHGF 
VVLSEHAEFL YKTTDYYTPS AERCIAWNDP DLAIDWQFDG EPSLSAKDQQ GKSLKDADLF 
S