Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_5340 |
Symbol | |
ID | 1187025 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 6068635 |
End bp | 6070296 |
Gene Length | 1662 bp |
Protein Length | 553 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637396659 |
Product | MFS permease-like protein |
Protein accession | NP_795071 |
Protein GI | 28872452 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCACAA GTACAGCCTT GGGCGGCGAA GCCGCTCAGC CTGCGTTCTT GTCCAAAGAG CGCATTATCG CCAAGCCCGG TTTCAACCGT TGGCTTGTTC CACCAGCAGC ATTGGCAATC CATCTTTGCA TCGGCATGGC TTATGGCTTC TCGGTGTTCT GGTTGCCACT GTCGAAGGCA GTCGGTGTCA CTGCACCTGT TGCTTGCACT CCGGACATGG GTTTCTTCGC GCAGATGTTC GCGTCGACCT GTGACTGGCA GATCTCCATG CTGGGCTGGA TCTACACGCT GTTCTTCATC TTCCTGGGCT GCTCGGCTGC CATCTGGGGT GGCTGGCTGG AGCACGCAGG TCCACGCAAG GCAGGTGTTG TTTCGGCACT GTGCTGGTGT GGCGGTCTGC TGATTTCCGC GCTGGGTATC TACACGCACC AGATCTGGCT GATGTGGCTG GGCTCGGGCG TGATCGGCGG TATCGGTCTG GGGTTGGGCT ATATCTCCCC GGTATCCACC CTGATCAAGT GGTTCCCGGA CAAACGCGGC ATGGCGACCG GCATGGCGAT CATGGGCTTT GGTGGCGGCG CGATGGTGGG CGCACCCCTG GCCACTGCGT TGATGGGCCA CTTCGCTTCG GCTGAGGGCG TGGGCGTCTG GCAGAGCTTC GTGGTGATGG CGGTGATTTA CTTCATCTTC ATGATCGGCG GCGCGCTGGG CTATCGTGTT CCGCCAACTG GCTGGAAACC TGAGGGCTGG ACTGCTCCGG CTGCCAAGGC CAAGAACTCG ATGATCACCA ACCGTCACGT GCACGTCAGC GTGGCCTGGA AAACACCGCA ATTCCGTCTG GTCTGGCTGG TGCTGTGCCT TAACGTGTCG GCCGGTATCG GTATCCTGGG CATGGCTTCG CCACTGTTGC AGGAAGTGTT CGCCGGCAAA CTGCTGGGCA ACGATCTGAC ATTCAGCGAA CTCAATGCTG ATCAACTGAA GGCCATTGCT GCCATTGCAG CCGGCTTCAC CGGTCTGTTG AGCCTGTTCA ACATTGGCGG TCGTTTCTTC TGGGCGTCGT GCTCGGACTA CATTGGCCGT AAAGCGACTT ACTTTGTGTT CTTCGCGCTG GGCTTCCTGC TTTACGCTTC GGTTCCGACA CTGGGTCATA TGGGCAGCAT TGCGCTGTTC GTAGCGGCTT TCTGTGTGGT GCTGTCGATG TACGGTGGCG GTTTCGCGAC GGTTCCGGCC TATCTGGCTG ACTTGTTCGG TACGCAGATG GTGGGTGCGA TCCACGGTCG TCTGCTGACT GCATGGGCTG CGGCAGGTGT GCTGGGTCCG GTATTGGTCA ACTACCTGCG CGAGTATCAA CTCAGCCACG GTGTTGCGCG TGCCGATGCC TACAACATCA CCTTGTACAT CCTCGCGGGT CTGCTGGTGC TGGGCTTTAT CTGCAACCTG CTGATTCGTC CGGTTGCCGA CAAGTACTTC ATGACCGACG CCGAACTGGC TGCTGAACAG GCCATTGGTC GCGACAAGGG CGCTAGCGCC GCTACTTCGC TGGAGTGGAA AGCATCCTCC TCCAGCAAGC CGCTGGTGAT CGCTGCCTGG CTGGCGGTCG GCATCCCGCT GGCATGGGGC GTCTGGATTA CCCTGCAAAA GACCGCAGTG CTGTTTCACT AA
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Protein sequence | MSTSTALGGE AAQPAFLSKE RIIAKPGFNR WLVPPAALAI HLCIGMAYGF SVFWLPLSKA VGVTAPVACT PDMGFFAQMF ASTCDWQISM LGWIYTLFFI FLGCSAAIWG GWLEHAGPRK AGVVSALCWC GGLLISALGI YTHQIWLMWL GSGVIGGIGL GLGYISPVST LIKWFPDKRG MATGMAIMGF GGGAMVGAPL ATALMGHFAS AEGVGVWQSF VVMAVIYFIF MIGGALGYRV PPTGWKPEGW TAPAAKAKNS MITNRHVHVS VAWKTPQFRL VWLVLCLNVS AGIGILGMAS PLLQEVFAGK LLGNDLTFSE LNADQLKAIA AIAAGFTGLL SLFNIGGRFF WASCSDYIGR KATYFVFFAL GFLLYASVPT LGHMGSIALF VAAFCVVLSM YGGGFATVPA YLADLFGTQM VGAIHGRLLT AWAAAGVLGP VLVNYLREYQ LSHGVARADA YNITLYILAG LLVLGFICNL LIRPVADKYF MTDAELAAEQ AIGRDKGASA ATSLEWKASS SSKPLVIAAW LAVGIPLAWG VWITLQKTAV LFH
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