Gene PSPTO_5340 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_5340 
Symbol 
ID1187025 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp6068635 
End bp6070296 
Gene Length1662 bp 
Protein Length553 aa 
Translation table11 
GC content59% 
IMG OID637396659 
ProductMFS permease-like protein 
Protein accessionNP_795071 
Protein GI28872452 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCACAA GTACAGCCTT GGGCGGCGAA GCCGCTCAGC CTGCGTTCTT GTCCAAAGAG 
CGCATTATCG CCAAGCCCGG TTTCAACCGT TGGCTTGTTC CACCAGCAGC ATTGGCAATC
CATCTTTGCA TCGGCATGGC TTATGGCTTC TCGGTGTTCT GGTTGCCACT GTCGAAGGCA
GTCGGTGTCA CTGCACCTGT TGCTTGCACT CCGGACATGG GTTTCTTCGC GCAGATGTTC
GCGTCGACCT GTGACTGGCA GATCTCCATG CTGGGCTGGA TCTACACGCT GTTCTTCATC
TTCCTGGGCT GCTCGGCTGC CATCTGGGGT GGCTGGCTGG AGCACGCAGG TCCACGCAAG
GCAGGTGTTG TTTCGGCACT GTGCTGGTGT GGCGGTCTGC TGATTTCCGC GCTGGGTATC
TACACGCACC AGATCTGGCT GATGTGGCTG GGCTCGGGCG TGATCGGCGG TATCGGTCTG
GGGTTGGGCT ATATCTCCCC GGTATCCACC CTGATCAAGT GGTTCCCGGA CAAACGCGGC
ATGGCGACCG GCATGGCGAT CATGGGCTTT GGTGGCGGCG CGATGGTGGG CGCACCCCTG
GCCACTGCGT TGATGGGCCA CTTCGCTTCG GCTGAGGGCG TGGGCGTCTG GCAGAGCTTC
GTGGTGATGG CGGTGATTTA CTTCATCTTC ATGATCGGCG GCGCGCTGGG CTATCGTGTT
CCGCCAACTG GCTGGAAACC TGAGGGCTGG ACTGCTCCGG CTGCCAAGGC CAAGAACTCG
ATGATCACCA ACCGTCACGT GCACGTCAGC GTGGCCTGGA AAACACCGCA ATTCCGTCTG
GTCTGGCTGG TGCTGTGCCT TAACGTGTCG GCCGGTATCG GTATCCTGGG CATGGCTTCG
CCACTGTTGC AGGAAGTGTT CGCCGGCAAA CTGCTGGGCA ACGATCTGAC ATTCAGCGAA
CTCAATGCTG ATCAACTGAA GGCCATTGCT GCCATTGCAG CCGGCTTCAC CGGTCTGTTG
AGCCTGTTCA ACATTGGCGG TCGTTTCTTC TGGGCGTCGT GCTCGGACTA CATTGGCCGT
AAAGCGACTT ACTTTGTGTT CTTCGCGCTG GGCTTCCTGC TTTACGCTTC GGTTCCGACA
CTGGGTCATA TGGGCAGCAT TGCGCTGTTC GTAGCGGCTT TCTGTGTGGT GCTGTCGATG
TACGGTGGCG GTTTCGCGAC GGTTCCGGCC TATCTGGCTG ACTTGTTCGG TACGCAGATG
GTGGGTGCGA TCCACGGTCG TCTGCTGACT GCATGGGCTG CGGCAGGTGT GCTGGGTCCG
GTATTGGTCA ACTACCTGCG CGAGTATCAA CTCAGCCACG GTGTTGCGCG TGCCGATGCC
TACAACATCA CCTTGTACAT CCTCGCGGGT CTGCTGGTGC TGGGCTTTAT CTGCAACCTG
CTGATTCGTC CGGTTGCCGA CAAGTACTTC ATGACCGACG CCGAACTGGC TGCTGAACAG
GCCATTGGTC GCGACAAGGG CGCTAGCGCC GCTACTTCGC TGGAGTGGAA AGCATCCTCC
TCCAGCAAGC CGCTGGTGAT CGCTGCCTGG CTGGCGGTCG GCATCCCGCT GGCATGGGGC
GTCTGGATTA CCCTGCAAAA GACCGCAGTG CTGTTTCACT AA
 
Protein sequence
MSTSTALGGE AAQPAFLSKE RIIAKPGFNR WLVPPAALAI HLCIGMAYGF SVFWLPLSKA 
VGVTAPVACT PDMGFFAQMF ASTCDWQISM LGWIYTLFFI FLGCSAAIWG GWLEHAGPRK
AGVVSALCWC GGLLISALGI YTHQIWLMWL GSGVIGGIGL GLGYISPVST LIKWFPDKRG
MATGMAIMGF GGGAMVGAPL ATALMGHFAS AEGVGVWQSF VVMAVIYFIF MIGGALGYRV
PPTGWKPEGW TAPAAKAKNS MITNRHVHVS VAWKTPQFRL VWLVLCLNVS AGIGILGMAS
PLLQEVFAGK LLGNDLTFSE LNADQLKAIA AIAAGFTGLL SLFNIGGRFF WASCSDYIGR
KATYFVFFAL GFLLYASVPT LGHMGSIALF VAAFCVVLSM YGGGFATVPA YLADLFGTQM
VGAIHGRLLT AWAAAGVLGP VLVNYLREYQ LSHGVARADA YNITLYILAG LLVLGFICNL
LIRPVADKYF MTDAELAAEQ AIGRDKGASA ATSLEWKASS SSKPLVIAAW LAVGIPLAWG
VWITLQKTAV LFH