Gene PSPTO_5330 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_5330 
Symbol 
ID1187015 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp6058453 
End bp6059235 
Gene Length783 bp 
Protein Length260 aa 
Translation table11 
GC content63% 
IMG OID637396649 
Producthypothetical protein 
Protein accessionNP_795061 
Protein GI28872442 
COG category[S] Function unknown 
COG ID[COG2861] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCGCTTTC TCGGCTCGCT TCTGTTGGCA CTCTCGATCA CTGGCGCTGC GCATGCAGCG 
CCAGTCGATC ATGCTGAAAA AACCTCGAAA GCCTACTTCA CCCTGATCAT CGACGATCTG
GGCCAGAACC CGGTGCGCGA CAGCCGTACT CTGGCGCTCC CAGGCCCGGT CACGCTGGCG
ATCATGCCCG ACACCCCGCA CGCCACCGAG TTTGCCCGCG AGGCCCATCG CGCCGGTAAA
ACGGTGATTC TGCACATGCC GATGGACCCC GCGACCGGCC CTTACGCCTG GCACCCCGAG
CTGCCTCTGC CGGAACTGGA AAGTCGTCTG AATGCAGCGC TGTTGAAAGT GCCGTATGCC
GCCGGTATCA ATAACCACAT GGGCAGCCGC ATGACCGCCG AGCCGGTAGC CATGACCTGG
CTAATGGCCG AACTGCAGCG ACGTCATCTG TTTTTCGTCG ACAGCCGCAC CAGCGCAAAA
ACCGTGGCCG CCGCCGAGGC GCAGCGCATC GGTCTGGCCA GCGTTTCGCG CGATGTGTTC
CTGGACGACG AACGCACGGC CGAAGCCATC ACCCGCCAAT TGCAGACTGC AATCAAACTG
GCCCAAAAGC ACGGTTCAGC GGTGGTTATC GGTCACCCCT ACCCGGTCAC GCTGGACGTG
CTGGAGCGCG AGCTGCCCAA GCTCAAGGCT CAGGGCGTCG AATGGATCGA CCTGCGCAGC
ATGATCAGCG AACGCGGCAA TCAGGCGAGT GCGGCGCATG GCAAGAATGG ACTTTACCGC
TGA
 
Protein sequence
MRFLGSLLLA LSITGAAHAA PVDHAEKTSK AYFTLIIDDL GQNPVRDSRT LALPGPVTLA 
IMPDTPHATE FAREAHRAGK TVILHMPMDP ATGPYAWHPE LPLPELESRL NAALLKVPYA
AGINNHMGSR MTAEPVAMTW LMAELQRRHL FFVDSRTSAK TVAAAEAQRI GLASVSRDVF
LDDERTAEAI TRQLQTAIKL AQKHGSAVVI GHPYPVTLDV LERELPKLKA QGVEWIDLRS
MISERGNQAS AAHGKNGLYR