| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5253 |
|---|
| Symbol | elbB |
|---|
| ID | 1186938 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 5973609 |
|---|
| End bp | 5974277 |
|---|
| Gene Length | 669 bp |
|---|
| Protein Length | 222 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637396572 |
|---|
| Product | enhancing lycopene biosynthesis protein 2 |
|---|
| Protein accession | NP_794984 |
|---|
| Protein GI | 28872365 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3155] Uncharacterized protein involved in an early stage of isoprenoid biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAAAA AAGTGGCTGT GATTCTCTCA GGATGCGGCG TCTACGATGG CGCTGAAATT
CATGAAAGCG TATTGACCCT GCTACGCCTG GATCAACGTG GCGCGCAGGT CCAGTGCTTC
GCGCCGGACA TCGCTCAACA CCATGTGATC AATCACCTGA CGGGCGAAGA AATGCCCGAA
TCGCGCAATG TACTGATCGA ATCGGCACGC ATTGCCCGCG GCGAAGTGAA AGACATTCGC
GATGCCAACG CCGGCGATTT CGACGCACTG ATCATCCCCG GCGGCTTCGG CTCGGCCAAA
AACCTCTCGG ACCTCGCCCT GCAAGGTCAC GCCTGCCAGG TGGAAGCCGG GCTGCTGGAG
CTGGCCGAGG CGTTCGCCGA AGCCGGCAAA CCGGTCGGGC TGATCTGCAT CACTCCGGCA
CTGGCCGCCA AGATCTATGG CCCCGGCGTC ATTTGCACCA TCGGCAACGA CCCTGAAACA
GCAGCTGCCA TTACCAAAAT GGGCGGCAGC CATGCGCAAT GCGCTGTCGA TGACATCGTC
GAAGACCCCG CACGGAAACT GGTCAGCACG CCCGCCTACA TGGTCGCCAA AAGCATTGGC
GAGGCCGCAT CAGGCATCAA CAAGCTGGTT GACCGGGTAT TGGAACTGAC TCACGAAGGC
GATGCCTGA
|
|---|
| Protein sequence | MQKKVAVILS GCGVYDGAEI HESVLTLLRL DQRGAQVQCF APDIAQHHVI NHLTGEEMPE
SRNVLIESAR IARGEVKDIR DANAGDFDAL IIPGGFGSAK NLSDLALQGH ACQVEAGLLE
LAEAFAEAGK PVGLICITPA LAAKIYGPGV ICTIGNDPET AAAITKMGGS HAQCAVDDIV
EDPARKLVST PAYMVAKSIG EAASGINKLV DRVLELTHEG DA
|
|---|
| |