| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5250 |
|---|
| Symbol | ppk |
|---|
| ID | 1186935 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 5969271 |
|---|
| End bp | 5971481 |
|---|
| Gene Length | 2211 bp |
|---|
| Protein Length | 736 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637396569 |
|---|
| Product | polyphosphate kinase |
|---|
| Protein accession | NP_794981 |
|---|
| Protein GI | 28872362 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0855] Polyphosphate kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATACCG AAGCACTCAT CGAAGCCGCT GTTGAAGTCG ATGTCCAGGA GGCTGCACCG
GTGGTCGAGC CTGATATCGA AGTAATCCCG GCCATCGAGG CGCCTGCCGC TTCGTTGCCC
GCCATCGTCG CTCCGAACCT GGACGACAGC AGCCTGTATA TCCACCGCGA ACTGTCGCAA
TTGCAGTTCA ACATCCGGGT ACTGGAACAG GCGCTCGATG AGTCCTACCC GTTGCTGGAG
CGGCTGAAGT TTCTGCTGAT CTTTTCCAGC AACCTCGATG AGTTCTTCGA GATTCGTGTT
GCAGGCCTCA AGAAGCAGAT CACGTTTGCC CGCGAGCAGG CAGGGGCCGA CGGTTTGCAG
CCGCATCAGG CACTGGCCAG GATCAGCGAG CTGGTGCATG GTCATGTCGA TCGGCAATAC
GCGATCCTCA ACGACATTCT GCTGCCGGAG CTTGAAAAGC ATCAGGTCCG CTTCATCCGC
CGCCGTCACT GGACGGCCAA GCTCAAGGCC TGGGTACGTC GCTATTTCCG TGACGAGATC
GCGCCGATCA TCACCCCGAT CGGTCTGGAC CCGACGCACC CGTTCCCGCT GCTGGTCAAC
AAGAGCCTGA ACTTCATCGT CGAGCTGGAA GGTATCGATG CCTTCGGTCG CGATTCGGGC
CTTGCGATCA TTCCGGCCCC GCGTCTGCTG CCGCGTGTCA TCAAGGTGCC GGAAGAGGTG
TGTGGCCCGG GCGACAACTT CGTGTTCCTG TCGTCGATGA TCCACGCCCA CGCTGACGAT
CTGTTCCAGG GCATGAAGGT CAAGGGCTGC TACCAGTTCC GCCTGACCCG AAACGCCGAT
CTGGCGCTGG ACTCGGAAGA CGTGGAAGAT CTGGCGCGTG CGCTGCGTGG CGAACTGTTC
TCGCGTCGTT ACGGCGATGC GGTACGTCTG GAAGTGGCCG ATACCTGCCC TAAACACCTG
TCGGACTACC TGCTCAAGCA GTTCAACCTG CACGAGTCCG AGCTGTATCA GGTCAACGGC
CCGGTCAACC TGACGCGCCT GTTCAGCATC ACCGGCCTGG ACAGCCACCC CGAATTGCAA
TACCCGCCGT TCACGCCAGC CATCCCCAAG CTGCTGCAGA ACAGCGAAAA CGTTTTCAGC
GTGGTCAGCA AGCAGGACAT CCTGTTGCTG CATCCTTTCG AGTCGTTCAC ACCGGTGGTC
GATCTGTTGC GTCAGGCTGC CAAGGACCCG CACGTGCTGG CGGTGCGCCA GACGCTGTAC
CGCAGTGGCG CGAACTCGGA AATCGTCGAC GCGCTGGTTG ATGCCGCCCG TAACGGCAAG
GAAGTCACTG CGGTGATCGA GTTGCGTGCC CGATTTGACG AAGAGTCCAA CCTGCAACTG
GCCAGCCGCC TGCAAGCCGC GGGCGCGGTG GTGATCTACG GTGTGGTCGG CTTCAAGACC
CACGCCAAGA TGATGCTGAT CCTGCGTCGC GAGGCGGGCG AGATCGTGCG TTACGCGCAC
CTTGGGACGG GTAACTATCA CGCCGGCAAC GCACGTCTTT ACACCGACTA CAGCCTGCTG
ACCTCTGACG ACGCGCTGTG CGAAGACGTC GGCAAACTGT TCAGCCAGTT GATCGGCATG
GGCAAGACCC TGCGCATGAA GAAACTGCTG CATGCGCCGT TCACGCTGAA GAAGGGCATG
CTCGACATGA TTGCCCGCGA AACGCAGTTC GCACTCGACG GCAAGCCTGC GCACATCATC
GCCAAGTTCA ACTCGCTGAC CGATCCGAAG ATCATCCGCG CGCTGTACAA GGCCAGCCAG
TCTGGTGTAC GTATCGATCT GGTGGTGCGC GGCATGTGCT GCCTGCGTCC GGGTATTGCC
GGGGTCTCGC ACAACATTCA TGTGCGCTCG ATCATCGGCC GCTTCCTGGA GCACACGCGG
GTGTTCTACT TCCTCAACGG CGGCGACGAG CAGATGTTCC TGTCGAGTGC CGACTGGATG
GAGCGCAACC TCGACAAGCG TGTCGAGACC TGCTTCCCGG TGGAAGGCAA GAAGTTGATT
CTGCGCGTGA AGAAGGAGCT GGAAAGTTAC CTGACCGACA ACACCCACAG CTGGCTGCTG
CAGTCAGACG GGCGTTACGT GCGCAGCATG CCGACTGGCA ATCAGAATGC CCGAAGCGCC
CAGGCGACCC TGCTGGAGCG CCTGAGCAAC CCGGTTCTCA GCGTACGCTG A
|
|---|
| Protein sequence | MNTEALIEAA VEVDVQEAAP VVEPDIEVIP AIEAPAASLP AIVAPNLDDS SLYIHRELSQ
LQFNIRVLEQ ALDESYPLLE RLKFLLIFSS NLDEFFEIRV AGLKKQITFA REQAGADGLQ
PHQALARISE LVHGHVDRQY AILNDILLPE LEKHQVRFIR RRHWTAKLKA WVRRYFRDEI
APIITPIGLD PTHPFPLLVN KSLNFIVELE GIDAFGRDSG LAIIPAPRLL PRVIKVPEEV
CGPGDNFVFL SSMIHAHADD LFQGMKVKGC YQFRLTRNAD LALDSEDVED LARALRGELF
SRRYGDAVRL EVADTCPKHL SDYLLKQFNL HESELYQVNG PVNLTRLFSI TGLDSHPELQ
YPPFTPAIPK LLQNSENVFS VVSKQDILLL HPFESFTPVV DLLRQAAKDP HVLAVRQTLY
RSGANSEIVD ALVDAARNGK EVTAVIELRA RFDEESNLQL ASRLQAAGAV VIYGVVGFKT
HAKMMLILRR EAGEIVRYAH LGTGNYHAGN ARLYTDYSLL TSDDALCEDV GKLFSQLIGM
GKTLRMKKLL HAPFTLKKGM LDMIARETQF ALDGKPAHII AKFNSLTDPK IIRALYKASQ
SGVRIDLVVR GMCCLRPGIA GVSHNIHVRS IIGRFLEHTR VFYFLNGGDE QMFLSSADWM
ERNLDKRVET CFPVEGKKLI LRVKKELESY LTDNTHSWLL QSDGRYVRSM PTGNQNARSA
QATLLERLSN PVLSVR
|
|---|
| |