Gene PSPTO_5244 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_5244 
Symbol 
ID1186929 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand- 
Start bp5963595 
End bp5964299 
Gene Length705 bp 
Protein Length234 aa 
Translation table11 
GC content61% 
IMG OID637396563 
Producttranscriptional regulator, GntR family 
Protein accessionNP_794975 
Protein GI28872356 
COG category[K] Transcription 
COG ID[COG2186] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCGAACA CTTCACTCGC AGTACCCGAA TCAGCCCTGC GGGCCATTCG CAAGTTGATT 
GCCGAGCAAG GGTACAAGCC TGGCGAAAGC CTGCCGTCGC AGCGCGATCT GGCGGTTTTG 
CTGGGGGTCA GTCGTGCATC GCTGCGCGAA GCTCTTTCAT CGCTCAGCGC GTTGGGCGTG 
GTCAGCGTTC AGCCCGGTAA AGGCGTGTTC GTGCAGTCGA TTTCTGAACC AGAACAGCGC 
ACGGGCGGAT TTTCCTGGCC GTTCGACGCT CAGGTTTCAC CTGCTGATAC CTTCCAGTTG 
CGTTATGCCC TGGAAGGTTT CGCTGCGGGG CTGGCCGCCG TGACCCTGAC CGCCGACGAG 
CGCGACGTGC TGGAAGACAA CGTCGAAGCC ATGCGCCTGG AGTTGCGCAG CGGAGATTTC 
GAGGCGGCGG CCAGGCTGGA TTTCGAGTTT CATCGGCATA TTCTGGTCGC CAGTGGCAAT 
CAGGCCATGC TGGGGATCGT CACCGCAGGC GCCGATATTT TTCTGGAAAG CCAGAAAATG 
CCGTTCATAC GCGCGGCCAG GGTTATGGAA ACCTGGCAAG AACACCGCAA GATCCTTCGC 
GCGCTGGCCC GCCATGCGTC GGGGCCTGCG CAAAAAGCCA TGCAGGAGCA CATACGAGGC 
GCAGCGCTGC GCACCGGTAT CGTGTTCGTT TCGCCCTCTG GCTGA
 
Protein sequence
MPNTSLAVPE SALRAIRKLI AEQGYKPGES LPSQRDLAVL LGVSRASLRE ALSSLSALGV 
VSVQPGKGVF VQSISEPEQR TGGFSWPFDA QVSPADTFQL RYALEGFAAG LAAVTLTADE 
RDVLEDNVEA MRLELRSGDF EAAARLDFEF HRHILVASGN QAMLGIVTAG ADIFLESQKM 
PFIRAARVME TWQEHRKILR ALARHASGPA QKAMQEHIRG AALRTGIVFV SPSG