| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5241 |
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| Symbol | ubiD |
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| ID | 1186926 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 5960058 |
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| End bp | 5961524 |
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| Gene Length | 1467 bp |
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| Protein Length | 488 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637396560 |
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| Product | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase |
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| Protein accession | NP_794972 |
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| Protein GI | 28872353 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0043] 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases |
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| TIGRFAM ID | [TIGR00148] UbiD family decarboxylases |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATTCA AAGATCTAAG GGATTTCGTG CAGCAGTTGG AGCAGCGCGG AGAGTTGAAA
CGCATTCAGA TGCCGATCTC GCCTGTGCTG GAAATGACTG AAATCTGTGA CCGTACCTTG
CGCGCCAAAG GCCCGGCCCT GCTGTTTGAA AACCCGGTTG GCTTTGATAT TCCGGTGCTG
GGCAACCTGT TCGGCACGCC GGAGCGCGTG GCCATGGGCA TGGGCGCGGA AGCCGTCACC
GAGCTGCGCG AAATCGGCAA GTTGCTTGCG TTTCTCAAGG AGCCCGAGCC GCCCAAAGGC
CTGAAAGATG CCTGGTCCAA GCTGCCCATC TTCCGCAAAG TCATCGCCAT GGCGCCCAAG
GTCGTCAAGG ATGCACCCTG CCAGGAGATC GTCATCGAGG GTGATGACGT CGATCTCGGC
ATGTTGCCGG TGCAGACCTG CTGGCCGGGC GATGTCGCGC CGCTGATCAC CTGGGGCCTG
ACCGTGACCA AAGGCCCGAA CAAGGAGCGG CAGAACCTCG GTATTTATCG CCAGCAGGTC
ATCGGCCGCA ACAAGATCAT CATGCGCTGG CTCAGCCATC GCGGTGGCGC GCTTGACTTC
CGCGACTGGT GCGTCAAGCA TCCTGGCGAG CCTTATCCGG TGGCCGTCGC ACTGGGCGCG
GACCCGGCGA CCATTCTCGG TGCCGTGACG CCGGTGCCCG ACAGCCTGTC CGAATACGCC
TTCGCCGGGC TACTGCGTGG CTCGCGCACC GAGCTGATCA AGTGCCGTGG CAGCAACCTG
CAAGTGCCAG CCAGTGCCGA AATCGTGCTT GAGGGCGTGA TTCATCCGGG CGAGATGGCC
AACGAAGGCC CCTACGGCGA TCACACCGGT TATTACAACG AAGTCGACAG CTTTCCGGTG
CTCACCGTCG AGCGCATCAC CCACCGCATC AAGCCGATCT ACCACAGCAC CTACACCGGG
CGTCCACCGG ACGAGCCGGC TATCCTGGGT GTGGCGCTGA ACGAAGTGTT CGTGCCGATT
CTGCAGAAGC AGTTTCCGGA AATCGTCGAT TTCTACCTGC CGCCCGAGGG GTGCTCTTAC
CGCATGGCGG TGGTGACTAT CAAGAAACAG TACCCCGGCC ATGCCAAGCG CGTGATGCTG
GGCGTCTGGT CGTTCCTGCG CCAGTTTATG TACACCAAAT TTGTGATCGT CACCGATGAC
GACATCAATG CGCGTGACTG GAATGACGTG ATCTGGGCCA TCACCACCCG CATGGACCCC
AAGCGCGACA CGGTCATGAT CGACAACACG CCCATCGATT ACCTCGATTT TGCCTCTCCG
GTGTCTGGAT TGGGATCAAA AATGGGCCTG GATGCCACTA ACAAATGGCC AGGGGAAACC
ACCCGCGAAT GGGGCAGGGC GATCGTCAAG GACGAAGCCA CCACGCGCCG GGTGGACGAG
ATCTGGACTC AGTTGGGAAT AGACTGA
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| Protein sequence | MKFKDLRDFV QQLEQRGELK RIQMPISPVL EMTEICDRTL RAKGPALLFE NPVGFDIPVL
GNLFGTPERV AMGMGAEAVT ELREIGKLLA FLKEPEPPKG LKDAWSKLPI FRKVIAMAPK
VVKDAPCQEI VIEGDDVDLG MLPVQTCWPG DVAPLITWGL TVTKGPNKER QNLGIYRQQV
IGRNKIIMRW LSHRGGALDF RDWCVKHPGE PYPVAVALGA DPATILGAVT PVPDSLSEYA
FAGLLRGSRT ELIKCRGSNL QVPASAEIVL EGVIHPGEMA NEGPYGDHTG YYNEVDSFPV
LTVERITHRI KPIYHSTYTG RPPDEPAILG VALNEVFVPI LQKQFPEIVD FYLPPEGCSY
RMAVVTIKKQ YPGHAKRVML GVWSFLRQFM YTKFVIVTDD DINARDWNDV IWAITTRMDP
KRDTVMIDNT PIDYLDFASP VSGLGSKMGL DATNKWPGET TREWGRAIVK DEATTRRVDE
IWTQLGID
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