Gene PSPTO_5239 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_5239 
Symbol 
ID1186924 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand- 
Start bp5958214 
End bp5958882 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content64% 
IMG OID637396558 
ProductChaC-related protein 
Protein accessionNP_794970 
Protein GI28872351 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG3703] Uncharacterized protein involved in cation transport 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAGAACC CAATCAACGA GTTGGCCGCT GCAGTGCATG ACGGCCTCGG TCTGACGTAC 
CCGCCCATCA TCGACATGGG CCCACAGCTT ACCCGCGAGC AACTGCTCGC ATCCATGAGC 
GCCACCATGC GTCGCCATAA GGGCGGTCCG GTCTGGCTGT TCGCTTACGG GTCGCTGATC 
TGGCGTCCCG AGTGCACCGC CGTAGAGAGC CAGCGCGGCC GAGTGCACGG TTATCACCGC 
GGGCTTTACC TTTGGTCGCA CGAACATCGC GGCACGCCGG AAGTACCCGG CCTGGTATTC 
GGGCTGGACC GGGGCGGCTC ATGCACCGGT TTCGCCTATC GGCTGCCGGA TGATTGCCTC 
GAGAAGTCGC TGCTGGCTTT GTGGGAGCGC GAAATGCCTT ATCCCTCATA CCGGCCGCAC 
TGGCTCAACT GCCGCCTTGA GGACGGCCGA AAGGTACAGG CATTGGGGTT CGTGCTGGAG 
CGGCATTTGC CCAGCTATGC GGGCAACCTG CCAGACAGCG TGCTCAGCCA GGTGCTGGCC 
AGCGCGAGCG GACGTTACGG GACCACTCGC GATTACGTGG AACAGACCGC CAAGGCGCTG 
CGTAGCCACG CCATGCCAGA CCTGAATCTG GAGGCGCGGC TCAAGCGCTG CAAGTCAGAG 
ACTGCGTGA
 
Protein sequence
MENPINELAA AVHDGLGLTY PPIIDMGPQL TREQLLASMS ATMRRHKGGP VWLFAYGSLI 
WRPECTAVES QRGRVHGYHR GLYLWSHEHR GTPEVPGLVF GLDRGGSCTG FAYRLPDDCL 
EKSLLALWER EMPYPSYRPH WLNCRLEDGR KVQALGFVLE RHLPSYAGNL PDSVLSQVLA 
SASGRYGTTR DYVEQTAKAL RSHAMPDLNL EARLKRCKSE TA