Gene PSPTO_5232 details

Gene Information

• Locus tag: PSPTO_5232
• ID: 1186917
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 5952403
• End bp: 5954370
• Gene Length: 1968 bp
• Protein Length: 655 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 637396551
• Product: pyocin/colicin protein, putative
• Protein accession: NP_794963
• Protein GI: 28872344

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAGATG AGCAAGAAAA ACATATATAT GTAAAATACT GGCCTATTCC AGACTTAGGG 
TCCGCAGACC GGGCAGCGGC CGAGGCAGCT GCTAATAAAG CGAGTGGTGG AGGTAATTCA 
GGCTGGAGCA TTGGAATCGG TGGTGGCGGC GGCGGACCCA GCACTACCGG CCTAGGCCCA 
GGGCGCGGTC GCCGAAGAGG TATCACTAAT AAACAGCTGA GACGTCTATT AAGGCAACAA 
GAGGCAGAGG CGCATGCGTT GGCCCAGCGG CAAGCGGCAG AACACGCGGC TCATCTCGCA 
CGAGTAGAAG CTGAGGCGCA TGCTCGGGCA ATGGCGGAAG CCGCCGAGCG AGAGCGCGTT 
GAAACGCAGG TACGCGCACA GGCCGAAAAA GATCAGGCAC ATCGACAGGC TCTTGAAACA 
CTGACAGCGT CCTATCCCTC GTTACAATCT GGATTGGCAC AAAACTACTT ACTGGCTTCT 
GCATCGCTGC CAAATGATCT TCAAAAAGAA ATAGCGTCAG GTCATGATCT AAATGCTGAT 
CCCCCACGCG ACGAGCAGAC TCTTGAGCTG ATACTTCAGA AAAAAACCAG GGTTAACTAT 
TTACTTGCAA TCAAACAACC GTTACTGGAC GAGCGTCGCG CTCAGGCTCT GAGTCTCACC 
GGTCAAGAGC TTGACCATGC TACACAAAAA GACCACCTGA ACTATCTGGT GTACTACAGC 
CAGGGTGATC CTCCACGTGT GCAGCAGGCC CATGAAGCGT GGGTAAACGC TTTATCTCAA 
ACCTACGAAG CAAAGCTTCT TGCCGAGTCG GTCACGCTGC TCAATGAACA ATCAGCAGCG 
CTTTCCATGC GCCATGCTGA ACTGTCGCTG GCCAATAAAC CGGCGAGTCA GGAAGCACGA 
CAGGCCGCTG GCATCGACAA GTTGTGGTCA GTTATTGCCC CCGCGTCAAC CACCACCGCA 
GCACCAGGCA TCAGAACCGT TGCGACCAAC ATCGCGAAGG ATCAACTCAT CAGGATTGCG 
ACCAGAACAT TGGGCAGCAA TCTGGTTACG TTGCTGGCGA TGTATCCACA ACCGTTGGGC 
GACGCAGAAC TGCCGCCCGC CGTTATCGCC ACACCTCTGT CGCAGCTCAA CCTGCCGCCG 
CATATCGATC TGCACTACCT TGCCAGCGTC AAAGGCACGC TGGATGTGCC TCATCGACTG 
ACATCCGATG AAGCTGGCAC AAGCGCTACA CGCTGGGTAG CTACGGACGG TGTGAAAGTT 
GGTACCAAGG TTCGCGTAAG AACTTTCACC TATAACGCAC AGAACAATTC CTACGAGTTT 
ATCCGTGACG GGGAATCGAC ACCGGCACTG ATATGGACGC CAATAGCACA ACCAGCGGAC 
AGTTCGACAA GCTCACCCGC AGGGCCACCC GCTTTGCCGG TAGATCCAGG CAACGTGGTG 
ACACCTTTTG TACCCGAGCT TGAAGCTTAC CCGGCGATTG ATCGAGATGA TCCTGATGAT 
TACATTCTCA TATCGCCGAT TGATTCAGGG CTGCCTAACA CTTACCTGTT GTTCAAGGAC 
CCGAGGTCGA TTCCGGGGGT TGCGAGTGGG TATGGTGAGC CGGTGACTGG AGTTTGGCTA 
GGGGACAGAA CGCGTGCAGA AGGCGCATCG ATTCCGACGC ATATTGCAGA TCAACTGCGC 
GGACGACGAT TTGGTGATTT TGCTTCACTG AGGAAAGCAA CCTGGATAGC CGTAGCCGAT 
GATCCCGAGC TAGGGAAACA GTCTACTCAG AATAACCTTG AAATAATGCG AGGTGGTGGT 
GCGCCCCACC CTAAACTCAG CGACCAAGCC GGAGGCCGTA CGAGATTTGA AATCCATCAT 
AAAAATTATA TTTCAAAAGG CGGCGCGGTT TATGACATCG ACAACTTGGT TATTATGACA 
TCAAGGCAAC ATATTGATCA TCACAGGAGC CAAAAAAATG ATCTTTAA 

 

Protein sequence

MADEQEKHIY VKYWPIPDLG SADRAAAEAA ANKASGGGNS GWSIGIGGGG GGPSTTGLGP 
GRGRRRGITN KQLRRLLRQQ EAEAHALAQR QAAEHAAHLA RVEAEAHARA MAEAAERERV 
ETQVRAQAEK DQAHRQALET LTASYPSLQS GLAQNYLLAS ASLPNDLQKE IASGHDLNAD 
PPRDEQTLEL ILQKKTRVNY LLAIKQPLLD ERRAQALSLT GQELDHATQK DHLNYLVYYS 
QGDPPRVQQA HEAWVNALSQ TYEAKLLAES VTLLNEQSAA LSMRHAELSL ANKPASQEAR 
QAAGIDKLWS VIAPASTTTA APGIRTVATN IAKDQLIRIA TRTLGSNLVT LLAMYPQPLG 
DAELPPAVIA TPLSQLNLPP HIDLHYLASV KGTLDVPHRL TSDEAGTSAT RWVATDGVKV 
GTKVRVRTFT YNAQNNSYEF IRDGESTPAL IWTPIAQPAD SSTSSPAGPP ALPVDPGNVV 
TPFVPELEAY PAIDRDDPDD YILISPIDSG LPNTYLLFKD PRSIPGVASG YGEPVTGVWL 
GDRTRAEGAS IPTHIADQLR GRRFGDFASL RKATWIAVAD DPELGKQSTQ NNLEIMRGGG 
APHPKLSDQA GGRTRFEIHH KNYISKGGAV YDIDNLVIMT SRQHIDHHRS QKNDL