Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_5219 |
Symbol | |
ID | 1186904 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 5940898 |
End bp | 5942208 |
Gene Length | 1311 bp |
Protein Length | 436 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637396538 |
Product | MFS transporter, phthalate permease family |
Protein accession | NP_794950 |
Protein GI | 28872331 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2271] Sugar phosphate permease |
TIGRFAM ID | [TIGR00893] d-galactonate transporter |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGATAA AAGGAATTCG ATGGTGGATG GTGGGGCTGG TCACGGCCGG CCTGGTCGTC AACTACCTCG CACGCAACAC GCTGTCCGTT GCAGCGCCGA CGCTCATGAG TGAGCTGAGC ATTTCCACCG AGCAGTACGC GCACATCGTG GTCGCCTGGC AGTTGTGCTA CGCGATCATG CAACCGGTGG CGGGCTACAT CATCGACGCA ATAGGCACCA AGATGGGCTT CGCGATTTTC GCTGTGGCCT GGTCGGGTGC CTGTGCTGCG GCAGCGTTCG CAACTGGCTG GCAGAGCCTG GCAATCTTCC GTGGCCTGCT CGGGCTGACC GAAGCGGCGG GCCTGCCTGC GGGCGTCAAG GCGACGACCG AATGGTTTCC AGCCAAAGAG CGCTCGGTCG CCATCGGCTG GTTCAACATC GGCTCGTCAT TCGGCGCATT GCTCGCGCCA CCGTTGGTGG TCTGGGCGAT TCTGCACAGC GGCTGGGAAC TGGCGTTTCT GATTGTCGGT GGCCTGGGGA TCGTGTGGAG CGGGCTGTGG CTGCTGCTCT ACAAGCACCC GCGTGACCAG AAACGTCTGG GCGATGCCGA GCGCGATTAC ATTCTCAGCG GCCAGGAATC GCGCCTCAAG GATGCACCTG CCCAAAAAGG CAGCTGGAAA CGCCTGTTCA AGAACCGCAA TTTCTACGCC ATCGCCTCGG CGCGCATTCT GTCCGAGCCC GCCTGGCAGA CCTTCAACGC GTGGATCCCG CTGTACCTGA TGACCGAACG GCACATGAAC ATCAAGGAAG TCGCGATGTT CGCCTGGCTG CCGTTCCTGG CGGCCGATAT CGGCTGCGTG CTGGGCGGCT ATCTCAGCCC GCTGTTTCAC AAGTACTGCA AGGTCTCGCT GTTCACCTCT CGCAAGATGG TCATGCTGTT CGGCTGTTCA TGCATGATCG GCCCGGCCTG CATCGGGCTG GTCGAAAGCC CTTACACCGC CATTGCGCTG CTGTGCATTG GTGGCTTTGC GCACCAGACT CTGTCGGGTG CGCTGTACTC GATCACCTCC GACTCGTTCG GCAAAAACGA AGTGGCCACG GCCACGGGCA TGGGCGGAAT GTTCGGGTTC ATGGGGGCGG CTGCGTTCAC GATGGTGTTT GGCGTGCTGG TCACCAAGAT CGGCTACAGC CCGCTGTTCG TGGTACTGGC GATCTTCGAC GTGGTGGCCG CGATTGTGGT CTGGACCGTG GCCCGCGAGG TGCCGCAAAA CGAAGAGCCC GTTGCACTTG GCGTCGGTGA GCCGGGCCCT CGTACAGTTC CGGTAACCTG A
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Protein sequence | MKIKGIRWWM VGLVTAGLVV NYLARNTLSV AAPTLMSELS ISTEQYAHIV VAWQLCYAIM QPVAGYIIDA IGTKMGFAIF AVAWSGACAA AAFATGWQSL AIFRGLLGLT EAAGLPAGVK ATTEWFPAKE RSVAIGWFNI GSSFGALLAP PLVVWAILHS GWELAFLIVG GLGIVWSGLW LLLYKHPRDQ KRLGDAERDY ILSGQESRLK DAPAQKGSWK RLFKNRNFYA IASARILSEP AWQTFNAWIP LYLMTERHMN IKEVAMFAWL PFLAADIGCV LGGYLSPLFH KYCKVSLFTS RKMVMLFGCS CMIGPACIGL VESPYTAIAL LCIGGFAHQT LSGALYSITS DSFGKNEVAT ATGMGGMFGF MGAAAFTMVF GVLVTKIGYS PLFVVLAIFD VVAAIVVWTV AREVPQNEEP VALGVGEPGP RTVPVT
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