Gene PSPTO_5146 details

Gene Information

• Locus tag: PSPTO_5146
• Symbol: phaD
• ID: 1186831
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 5858240
• End bp: 5858854
• Gene Length: 615 bp
• Protein Length: 204 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 637396465
• Product: transcriptional regulator PhaD
• Protein accession: NP_794877
• Protein GI: 28872258
• COG category: [K] Transcription
• COG ID: [COG1309] Transcriptional regulator

Plasmid Coverage information

• Num covering plasmid clones: 27
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAACCC GCGACCGTAT CCTTGAATGC GCGCTGACGC TGTTCAATCA GCAGGGCGAG 
CCGAACGTCT CCACACTGGA AATTGCCAAT GAAATGGGCA TCAGCCCCGG CAATCTGTAT 
TACCACTTTC ATGGCAAGGA GCCTTTGATT CTGGGCCTGT TCGAGCGTTT TCAGACAGAA 
CTGGCGCCGC TGCTCGATCC GCCCTCGGAC GCCAGGCTTG AGCCTGAAGA CTACTGGATG 
TTTCTGCACC TGATTGTCGA GCGGCTGTCG CACTATCGCT TTTTGTTTCA GGACCTGTCC 
AACCTCGCCG GACGACTGCC TAAACTGGCC CGCGGTATTC GCAACCTGCT CAACTCGATC 
AAAAAGACCC TGGCCTCATT GCTGGCCCGC CTCAAGGCCC GCGGGCAACT GGTCAGCGAA 
ACCCAGGCAT TGGGGCAACT GGTGGAGCAG ATCACCATGA ACCTGCTGTT TTCACTGGAC 
TACCAACGCA TCCTCGGACG CGAGGGCAAT GTGCGGGTGG TGGTTTACCA GATCATGATG 
CTTGTCATTC CACACCTGTT GCCCACCTCA AGAGAGGCGG CAGAACAGTT GGCGATGGAG 
TACCTGGGTG GGTGA 

 

Protein sequence

MKTRDRILEC ALTLFNQQGE PNVSTLEIAN EMGISPGNLY YHFHGKEPLI LGLFERFQTE 
LAPLLDPPSD ARLEPEDYWM FLHLIVERLS HYRFLFQDLS NLAGRLPKLA RGIRNLLNSI 
KKTLASLLAR LKARGQLVSE TQALGQLVEQ ITMNLLFSLD YQRILGREGN VRVVVYQIMM 
LVIPHLLPTS REAAEQLAME YLGG