| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5118 |
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| Symbol | hemE |
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| ID | 1186803 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 5819471 |
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| End bp | 5820535 |
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| Gene Length | 1065 bp |
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| Protein Length | 354 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637396438 |
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| Product | uroporphyrinogen decarboxylase |
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| Protein accession | NP_794850 |
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| Protein GI | 28872231 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
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| TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGCCC TGAAGAACGA CCGTTTCCTT CGTGCTTTGC TCAAGCAACC CGTAGACGTC
ACGCCGGTGT GGATGATGCG TCAGGCCGGC CGCTACCTGC CGGAATACCG CGCCAGCCGG
GCAAGCGCCG GGGATTTCAT GAGCCTGTGC AAGAACCCGC AGTTCGCCTG TGAAGTCACG
CTGCAACCGC TGGATCGTTA TCCGCTGGAT GCCGCGATTC TGTTTTCCGA CATCCTGACC
ATTCCCGATG CGATGGGCCT GGGCCTGTAC TTCGAGACCG GCGAAGGCCC GCGTTTCAAG
AAAACCGTCA GCACACTGGC GGACATCGAA GCGCTGCCAA TCCCGGATGC ACAGCAAGAC
CTGGGTTATG TGATGGACGC GGTCAGCACC ATCCGCCGCG AACTCAACGG TCGTGTGCCA
CTGATCGGTT TTGCCGGCAG CCCGTGGACC CTGGCGACCT ATATGGTCGA AGGCGGCTCG
TCCAAGGACT TCCGCAAATC CAAGGCCATG CTCTACGACA ACCCGCAAGC CATGCACCTG
CTGCTCGACA AGCTGGCGCA GTCGGTGACC TCGTACCTGA ACGGCCAGAT TCTGGCCGGT
GCCCAAGCGG TGCAGATCTT CGACAGTTGG GGCGGCAGCC TTTCTTCGGC GGCGTATCAG
GAATTCTCGC TGGCGTACAT GCGCAAGATC GTCAACGGCC TGATTCGTGA GAACGACGGG
CGCAAAGTGC CGGTCATCGT CTTCACCAAA GGCGGCGGAC TGTGGCTGGA AAGCATCGCT
GAGATCGGTG CCGACACCCT CGGCCTGGAC TGGACCTGCG ACATCGGCGA AGCGCGTCAG
CGTGTCGGCA ACAAGGTTTC GCTACAAGGC AACATGGACC CGACCGTGCT CTACGCTCGC
CCGGAAGCCA TCCGCCAGGA AGTCGCGCGC ATCCTCGCCA GCTACGGCAG CGGCACCGGC
CACGTCTTCA ACCTCGGCCA CGGCATCACC CCCGAAGTCG ACCCGGCCAA TGCCGGTGCG
TTCATCAACG CAGTACACGA GTTGTCGGCG CAGTATCACC AGTAA
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| Protein sequence | MTALKNDRFL RALLKQPVDV TPVWMMRQAG RYLPEYRASR ASAGDFMSLC KNPQFACEVT
LQPLDRYPLD AAILFSDILT IPDAMGLGLY FETGEGPRFK KTVSTLADIE ALPIPDAQQD
LGYVMDAVST IRRELNGRVP LIGFAGSPWT LATYMVEGGS SKDFRKSKAM LYDNPQAMHL
LLDKLAQSVT SYLNGQILAG AQAVQIFDSW GGSLSSAAYQ EFSLAYMRKI VNGLIRENDG
RKVPVIVFTK GGGLWLESIA EIGADTLGLD WTCDIGEARQ RVGNKVSLQG NMDPTVLYAR
PEAIRQEVAR ILASYGSGTG HVFNLGHGIT PEVDPANAGA FINAVHELSA QYHQ
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