| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5084 |
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| Symbol | mdcD |
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| ID | 1186769 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 5787603 |
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| End bp | 5788454 |
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| Gene Length | 852 bp |
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| Protein Length | 283 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637396404 |
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| Product | malonate decarboxylase, beta subunit |
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| Protein accession | NP_794816 |
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| Protein GI | 28872197 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0777] Acetyl-CoA carboxylase beta subunit |
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| TIGRFAM ID | [TIGR03133] malonate decarboxylase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGATA ACGCACGTTT GCTGAGCCAG CACAGCTTTA TCGAGCTCGG TGCCCGTCAA
CGCGCCCGCG CCTTGCTGGA TGCTGGCAGC TTTCGGGAAT TGCTCGGTCC GTTCGACCGC
GTCATGTCGC CCTGGCTGGC CATGCAAGGT GTCGTGCCGC AGGCCGATGA CGGCGTGGTG
GTTGCCAAGG GCACCGTTGA TGGCCTGCCG GTAGTGATCG CGGCCATCGA AGGCTCTTTT
CAGGGCGGCA GCATGGGCGA AGTCGGCGGC GCGAAAATGG CCGGTGCGCT GGAACTGGCC
GCTGAAGACA ACCGCAACGG CATCCCTACT GCCGCCATCG TGCTGCTGGA GACAGGCGGC
GTGCGTTTGC AGGAAGCCAA TCTGGGCCTG GCGGCGATTG CCGAGATTCA TGCTGCGATG
GTCGATCTGC GTCAGTACCA GCCGGTGATA GGTGTGGTGG CGGGCAGTGT CGGCTGTTTT
GGCGGGATGT CCATTGCCGC CGGTTTGTGC AGCTATTTAT TGGTGACTCA GGAAGCCCGG
CTCGGCCTGA ACGGACCGCA GGTGATCGAG CAGGAAGCGG GCATTGAAGA GTACGACTCA
CGCGACCGGC CCTTTATCTG GAGCCTGACC GGTGGCGAAC AGCGTTTCGC CAGCGATCTG
GTGGACGGCT TTGCTGCCGA CGATGTGGCC GACATCCGCC AGCAGGTCAG CGGCTGGCTC
AAGCAGGGCG TGCCGGCAAC GCATCGCAGC GGTCAGTACG CGCTGTTCCT GCAACGCTTG
GCCAGTCTCG ACACCGAGCC ACAAATCGAT CCGCAGAGCG TACGCACTCT CTATCAAGGA
GCCCGGCCAT GA
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| Protein sequence | MTDNARLLSQ HSFIELGARQ RARALLDAGS FRELLGPFDR VMSPWLAMQG VVPQADDGVV
VAKGTVDGLP VVIAAIEGSF QGGSMGEVGG AKMAGALELA AEDNRNGIPT AAIVLLETGG
VRLQEANLGL AAIAEIHAAM VDLRQYQPVI GVVAGSVGCF GGMSIAAGLC SYLLVTQEAR
LGLNGPQVIE QEAGIEEYDS RDRPFIWSLT GGEQRFASDL VDGFAADDVA DIRQQVSGWL
KQGVPATHRS GQYALFLQRL ASLDTEPQID PQSVRTLYQG ARP
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