| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5058 |
|---|
| Symbol | |
|---|
| ID | 1186743 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 5761665 |
|---|
| End bp | 5762873 |
|---|
| Gene Length | 1209 bp |
|---|
| Protein Length | 402 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637396378 |
|---|
| Product | aminotransferase, classes I and II |
|---|
| Protein accession | NP_794790 |
|---|
| Protein GI | 28872171 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGACC AAGGTTCGCC GCGCCGCTTT GCGCGCATAG ATCGACTCCC CCCTTACGTG
TTCAACATCA CCGCCGAGCT GAAGATGGCT GCGCGCCGTC GTGGTGAAGA CATCATCGAC
CTGAGCATGG GCAACCCCGA CGGGGCCACG CCGCCGCACA TCGTCGAAAA ACTGGTCACC
GTCGCCCAGC GCGAAGACAC CCACGGTTAC TCCACCTCAC GCGGCATTCC GCGCCTGCGC
CGGGCCATTT CCAACTGGTA CAAGAAACGC TACGAGGTCG ATATCGACCC TGAAAGCGAA
GCCATCGTGA CCATCGGCTC AAAGGAAGGC CTGGCGCACT TGATGCTCGC CACGCTGGAT
CAGGGCGATA CCGTGCTGGT ACCCAACCCC AGCTACCCGA TTCACATCTA CGGTGCCGTG
ATTGCCGGCG CCCAGGTGCG GTCGGTGCCA CTGGTGCCGG GCGTGGACTT CTTCGCCGAG
CTGGAAAAGG CCATCCGCGG CTCGATTCCC AAGCCGAAAA TGATGATTCT CGGCTTCCCG
TCGAACCCGA CCGCGCAGTG CGTGGAGCTG GATTTCTTCG AGCGCGTGGT GGCGCTGGCC
AAGCAATACG ACGTGCTGGT GATTCACGAC CTGGCGTACG CCGACATCGT CTACGACGGC
TGGAAAGCCC CGTCGATCAT GCAGGTGCCG GGCGCCAAGG ACATTGCCGT CGAGTTTTTC
ACCCTGTCCA AGAGCTACAA CATGGCGGGC TGGCGGATCG GCTTCATGGT TGGTAACCCC
GAGCTGGTGA ACGCACTGGC GCGGATCAAG AGTTACCACG ACTACGGCAC CTTCACGCCG
TTGCAGGTCG CCGCCATTGC CGCGCTGGAA GGCGATCAGC AGTGCGTGCT CGACATCGCC
GAGCAGTATC GCCAGCGCCG CAACGTACTG GTCAAAGGCC TGCACGAACT GGGCTGGATG
GTCGAAAACC CCAAGGCGTC GATGTATGTC TGGGCGAAGA TCCCCGAAGC CTACGCGCAC
TTGGGTTCGC TGGAGTTCGC CAAGAAGCTG TTGGCCGAAG CCAAGGTCTG TGTTTCGCCG
GGCATCGGTT TTGGTGAATA CGGCGACGAT CACGTGCGTT TCGCGCTGAT CGAGAATCAG
GACCGCATCC GCCAGGCCGT GCGCGGGATC CGCAGCATGT TCAGGGCCGA CGACAAGCTC
AAGTCCTGA
|
|---|
| Protein sequence | MADQGSPRRF ARIDRLPPYV FNITAELKMA ARRRGEDIID LSMGNPDGAT PPHIVEKLVT
VAQREDTHGY STSRGIPRLR RAISNWYKKR YEVDIDPESE AIVTIGSKEG LAHLMLATLD
QGDTVLVPNP SYPIHIYGAV IAGAQVRSVP LVPGVDFFAE LEKAIRGSIP KPKMMILGFP
SNPTAQCVEL DFFERVVALA KQYDVLVIHD LAYADIVYDG WKAPSIMQVP GAKDIAVEFF
TLSKSYNMAG WRIGFMVGNP ELVNALARIK SYHDYGTFTP LQVAAIAALE GDQQCVLDIA
EQYRQRRNVL VKGLHELGWM VENPKASMYV WAKIPEAYAH LGSLEFAKKL LAEAKVCVSP
GIGFGEYGDD HVRFALIENQ DRIRQAVRGI RSMFRADDKL KS
|
|---|
| |