Gene PSPTO_5057 details

Gene Information

• Locus tag: PSPTO_5057
• Symbol: ilvD
• ID: 1186742
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: -
• Start bp: 5759478
• End bp: 5761325
• Gene Length: 1848 bp
• Protein Length: 615 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 637396377
• Product: dihydroxy-acid dehydratase
• Protein accession: NP_794789
• Protein GI: 28872170
• COG category: [E] Amino acid transport and metabolism; [G] Carbohydrate transport and metabolism
• COG ID: [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase
• TIGRFAM ID: [TIGR00110] dihydroxy-acid dehydratase

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCTGATT ACCGCTCGAA AACGTCCACC CACGGCCGCA ACATGGCCGG CGCCCGTGCC 
CTGTGGCGCG CAACGGGCAT GAAGGACGAA GATTTCAAGA AACCGATCAT CGCCATCGCC 
AACTCCTTCA CCCAGTTCGT ACCGGGCCAC GTGCACCTCA AGGACATGGG CCAACTGGTC 
GCCCGTGAAG TCGAACGCGC CGGTGGCGTG GCCAAGGAAT TCAACACCAT TGCGGTCGAT 
GACGGCATTG CGATGGGCCA TGACGGCATG CTGTATTCGC TGCCAAGCCG CGAGATCATC 
GCCGACTCGG TCGAATATAT GGTCAACGCG CATTGCGCCG ACGCCATCGT GTGCATTTCC 
AACTGCGACA AGATCACCCC CGGCATGCTG ATGGCGGCAC TGCGCCTCAA TATCCCGGTG 
GTTTTCGTGT CTGGCGGGCC GATGGAAGCG GGCAAGACCA AACTGGCCAG CCACGGCCTG 
GACCTGGTCG ATGCAATGGT GATCGCTGCC GACTCCACCG CCAGCGACGA AAAAGTTGCC 
GAATACGAGC GCAGCGCCTG CCCAACGTGC GGTTCGTGCT CGGGCATGTT CACCGCCAAC 
TCGATGAACT GCCTGACCGA AGCGCTGGGC CTGGCACTGC CGGGCAACGG CTCTGCACTG 
GCCACCCACA GCGACCGCGA GCAACTGTTC CTGCAGGCTG GCCGCACCAT CGTTGACCTG 
TGCCGACAGT ACTACAAGGA AAACGACTAT TCGGTGTTGC CACGCAACAT CGCCAACTTC 
AAGGCGTTCG AAAACGCCAT GACGCTGGAC ATCGCCATGG GCGGTTCGAC CAACACCATC 
CTGCACTTGC TGGCGGCTGC TCAGGAAGCC GAGATCGACT TCGACCTGCA CCACATCGAC 
CGTCTGTCAC GCAAGGTTCC ACAGCTGTGC AAGGTCGCGC CTAACATCCA GAAGTACCAC 
ATGGAAGACG TACACCGCGC GGGCGGGATC TTCAGCATCC TCGGCGAGCT GGCACGCGGC 
GGCTTGCTGC ACACCGACCT GCCGACCGTG CACAGCAAAA CCATGGCCGA AGGCATCGCC 
AAATGGGACA TCACCCAGAC TGACGACGAA GCGGTGCACA CCTTCTTCAA GGCAGGCCCG 
GCCGGCATCC CGACGCAGAC CGCGTTCAGC CAGTCGACCC GTTGGGAAAG CCTGGACGAC 
GACCGTGAAA ACGGCTGCAT CCGCAGCGTC GAGCATGCCT ATTCTCAGGA AGGCGGCCTG 
GCCGTGCTGT ACGGCAACAT CGCGCTGGAT GGCTGCGTGG TGAAAACCGC CGGTGTCGAT 
GAGTCGATCC ACGTCTTTGA AGGCAACGCG AAGATCTTCG AAAGCCAGGA CAGCGCCGTG 
CGCGGGATTC TTGCTGACGA AGTGAAGGCG GGCGACATCG TCATCATTCG TTACGAAGGC 
CCGAAAGGCG GTCCGGGCAT GCAGGAAATG CTCTACCCGA CCTCGTACCT GAAGTCCAAA 
GGGCTGGGTA AAGACTGTGC GCTGCTCACC GATGGCCGTT TCTCGGGCGG TACCTCTGGC 
CTGTCCATCG GCCACGCCTC GCCGGAAGCA GCAGCGGGTG GTGCGATTGG TCTGGTGCGC 
GATGGTGACA AAGTGCTGAT CGACATCCCG AACCGCTCGA TCAACCTGAT GATCGACGAC 
GCCGAGATGG CCGAACGTCG CGCCGAACAG GACAAGAAAG GCTGGAAACC GGTCGAGTCG 
CGTCCACGTA AAGTGACCAC CGCACTCAAG GCCTACGCCC TGCTGGCGAC CAGCGCCGAC 
AAGGGCGCTG TGCGTGACAA GGCGTTGCTG GACAAATTGG TGCCTTGA 

 

Protein sequence

MPDYRSKTST HGRNMAGARA LWRATGMKDE DFKKPIIAIA NSFTQFVPGH VHLKDMGQLV 
AREVERAGGV AKEFNTIAVD DGIAMGHDGM LYSLPSREII ADSVEYMVNA HCADAIVCIS 
NCDKITPGML MAALRLNIPV VFVSGGPMEA GKTKLASHGL DLVDAMVIAA DSTASDEKVA 
EYERSACPTC GSCSGMFTAN SMNCLTEALG LALPGNGSAL ATHSDREQLF LQAGRTIVDL 
CRQYYKENDY SVLPRNIANF KAFENAMTLD IAMGGSTNTI LHLLAAAQEA EIDFDLHHID 
RLSRKVPQLC KVAPNIQKYH MEDVHRAGGI FSILGELARG GLLHTDLPTV HSKTMAEGIA 
KWDITQTDDE AVHTFFKAGP AGIPTQTAFS QSTRWESLDD DRENGCIRSV EHAYSQEGGL 
AVLYGNIALD GCVVKTAGVD ESIHVFEGNA KIFESQDSAV RGILADEVKA GDIVIIRYEG 
PKGGPGMQEM LYPTSYLKSK GLGKDCALLT DGRFSGGTSG LSIGHASPEA AAGGAIGLVR 
DGDKVLIDIP NRSINLMIDD AEMAERRAEQ DKKGWKPVES RPRKVTTALK AYALLATSAD 
KGAVRDKALL DKLVP