Gene PSPTO_5052 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_5052 
Symbol 
ID1186737 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp5750738 
End bp5751952 
Gene Length1215 bp 
Protein Length404 aa 
Translation table11 
GC content60% 
IMG OID637396373 
Productoxygen-independent coproporphyrinogen III oxidase, putative 
Protein accessionNP_794785 
Protein GI28872166 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases 
TIGRFAM ID[TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCCACG ATTCGCCTGC GCAGCCGCTG TTTCTCGGCG AGAGCGGTTT CTCGTCAGAG 
ACGCCACGCC CTGCACTGCC GCACCTGCCC CCGCTGTCGC TGTACATCCA CATTCCGTGG
TGCGTGCGCA AATGCCCGTA CTGCGACTTC AATTCGCACA CCGCAAGCCC CGTGCTGCCG
GAACAGGAAT ACGTCGACGC GCTGCTCGCC GATCTGGACC TCGACCTGCC GCACGTCTAC
GGCCGTGAAC TGCAATCGAT CTTCTTCGGT GGAGGCACGC CGAGCCTGTT CAGCGCCAAC
GCGCTGGGCC GTTTGCTGCG AGGCGTCGAA CAACGTATCC GCTTTGCCAG CGACATCGAG
ATCACCCTGG AAGCCAACCC CGGCACCTCT GAACAGGCGA AATTCAGCGC CTATCGCGGT
CTGGGGATCA ATCGGCTGTC CATCGGCATT CAGAGCTTTC AGGCATCCAA ACTCAAGGCG
CTGGGCCGTA TCCACAACGG CGACGAAGCG ATTCGCGCCG CCGACATGGC ACGTCAGGCC
GGTTTCGACA ACTTCAACTT GGACCTGATG CACGGCCTGC CGGACCAGTC CCAGGACGAG
GCGCTGGACG ATCTGCGCCA GGCCATCGCC CTCGCGCCGA CGCACTTGTC CTGGTATCAA
CTGACGCTGG AACCCAACAC CGTCTTCTGG AACCAGCCGC CGGTTTTGCC GGAAGACGAC
ATTCTTTGGG ACATTCAGGA AACCGGACAG CAGTTGCTGG CCACTCAGGG TTACGCGCAG
TACGAAGTGT CGGCTTATGC GCAACCCGGG AAACCGGCGC GGCATAACCT CAACTACTGG
GCGTTTGGTG ATTTCATCGG CATCGGCGCA GGCGCGCACG GCAAGCTGAG CCATCCGGAC
GGGCGCATTA TCCGCACCTG GAAGACCCGG CTGCCCAAGG ATTACCTGAA CCCGGACAAA
CCGTTTCAGG CCGGTTCAAA GCTGTTGCCG CTGGACGAAT TGCCGTTTGA ATTCTTGATG
AATGCATTGC GACTGACAAA TGGTGTGGAC GCTGCGTTAT TTCGGGAAAG AACGGGTCTA
AGCCTCGATT CGCTCGCCGA GGCACGCAGG CAAGCCGAAC AAAAAGGCCT GCTGCATGAA
GATCCGGCAC GCCTGATCGC GACCCCGCAA GGCCAGCTGT TCCTCAATGA CTTGCTGCAA
TATTTTCTGA TCTAA
 
Protein sequence
MTHDSPAQPL FLGESGFSSE TPRPALPHLP PLSLYIHIPW CVRKCPYCDF NSHTASPVLP 
EQEYVDALLA DLDLDLPHVY GRELQSIFFG GGTPSLFSAN ALGRLLRGVE QRIRFASDIE
ITLEANPGTS EQAKFSAYRG LGINRLSIGI QSFQASKLKA LGRIHNGDEA IRAADMARQA
GFDNFNLDLM HGLPDQSQDE ALDDLRQAIA LAPTHLSWYQ LTLEPNTVFW NQPPVLPEDD
ILWDIQETGQ QLLATQGYAQ YEVSAYAQPG KPARHNLNYW AFGDFIGIGA GAHGKLSHPD
GRIIRTWKTR LPKDYLNPDK PFQAGSKLLP LDELPFEFLM NALRLTNGVD AALFRERTGL
SLDSLAEARR QAEQKGLLHE DPARLIATPQ GQLFLNDLLQ YFLI