Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_5052 |
Symbol | |
ID | 1186737 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 5750738 |
End bp | 5751952 |
Gene Length | 1215 bp |
Protein Length | 404 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637396373 |
Product | oxygen-independent coproporphyrinogen III oxidase, putative |
Protein accession | NP_794785 |
Protein GI | 28872166 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
TIGRFAM ID | [TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCCACG ATTCGCCTGC GCAGCCGCTG TTTCTCGGCG AGAGCGGTTT CTCGTCAGAG ACGCCACGCC CTGCACTGCC GCACCTGCCC CCGCTGTCGC TGTACATCCA CATTCCGTGG TGCGTGCGCA AATGCCCGTA CTGCGACTTC AATTCGCACA CCGCAAGCCC CGTGCTGCCG GAACAGGAAT ACGTCGACGC GCTGCTCGCC GATCTGGACC TCGACCTGCC GCACGTCTAC GGCCGTGAAC TGCAATCGAT CTTCTTCGGT GGAGGCACGC CGAGCCTGTT CAGCGCCAAC GCGCTGGGCC GTTTGCTGCG AGGCGTCGAA CAACGTATCC GCTTTGCCAG CGACATCGAG ATCACCCTGG AAGCCAACCC CGGCACCTCT GAACAGGCGA AATTCAGCGC CTATCGCGGT CTGGGGATCA ATCGGCTGTC CATCGGCATT CAGAGCTTTC AGGCATCCAA ACTCAAGGCG CTGGGCCGTA TCCACAACGG CGACGAAGCG ATTCGCGCCG CCGACATGGC ACGTCAGGCC GGTTTCGACA ACTTCAACTT GGACCTGATG CACGGCCTGC CGGACCAGTC CCAGGACGAG GCGCTGGACG ATCTGCGCCA GGCCATCGCC CTCGCGCCGA CGCACTTGTC CTGGTATCAA CTGACGCTGG AACCCAACAC CGTCTTCTGG AACCAGCCGC CGGTTTTGCC GGAAGACGAC ATTCTTTGGG ACATTCAGGA AACCGGACAG CAGTTGCTGG CCACTCAGGG TTACGCGCAG TACGAAGTGT CGGCTTATGC GCAACCCGGG AAACCGGCGC GGCATAACCT CAACTACTGG GCGTTTGGTG ATTTCATCGG CATCGGCGCA GGCGCGCACG GCAAGCTGAG CCATCCGGAC GGGCGCATTA TCCGCACCTG GAAGACCCGG CTGCCCAAGG ATTACCTGAA CCCGGACAAA CCGTTTCAGG CCGGTTCAAA GCTGTTGCCG CTGGACGAAT TGCCGTTTGA ATTCTTGATG AATGCATTGC GACTGACAAA TGGTGTGGAC GCTGCGTTAT TTCGGGAAAG AACGGGTCTA AGCCTCGATT CGCTCGCCGA GGCACGCAGG CAAGCCGAAC AAAAAGGCCT GCTGCATGAA GATCCGGCAC GCCTGATCGC GACCCCGCAA GGCCAGCTGT TCCTCAATGA CTTGCTGCAA TATTTTCTGA TCTAA
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Protein sequence | MTHDSPAQPL FLGESGFSSE TPRPALPHLP PLSLYIHIPW CVRKCPYCDF NSHTASPVLP EQEYVDALLA DLDLDLPHVY GRELQSIFFG GGTPSLFSAN ALGRLLRGVE QRIRFASDIE ITLEANPGTS EQAKFSAYRG LGINRLSIGI QSFQASKLKA LGRIHNGDEA IRAADMARQA GFDNFNLDLM HGLPDQSQDE ALDDLRQAIA LAPTHLSWYQ LTLEPNTVFW NQPPVLPEDD ILWDIQETGQ QLLATQGYAQ YEVSAYAQPG KPARHNLNYW AFGDFIGIGA GAHGKLSHPD GRIIRTWKTR LPKDYLNPDK PFQAGSKLLP LDELPFEFLM NALRLTNGVD AALFRERTGL SLDSLAEARR QAEQKGLLHE DPARLIATPQ GQLFLNDLLQ YFLI
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