| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5045 |
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| Symbol | |
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| ID | 1186730 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 5744794 |
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| End bp | 5745828 |
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| Gene Length | 1035 bp |
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| Protein Length | 344 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637396366 |
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| Product | twitching motility protein |
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| Protein accession | NP_794778 |
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| Protein GI | 28872159 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.597487 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATATTA CCGAGCTGCT GGCCTTCAGT GCCAAACAGG GCGCGTCGGA CTTGCACCTC
TCTGCAGGTC TGCCACCGAT GATCCGCGTG GACGGCGATG TGCGGCGTAT CAACCTGCCC
CCGCTGGACG CCAAGGAGGT CAAGGCGCTG ATCTACGACA TCATGACCGA CCGGCAGCGT
CAGGATTTTG AAGAGCGCCT GGAAACCGAC TTTTCGTTTG AAGTGCCGGG TGTCGCGCGG
TTTCGGGTCA ACGCCTTCAA CCAGAATCGC GGTGCGGGCG CGGTATTTCG GACCATCCCG
TCGAAAATCC TCAGCATGGA AGACTTGGGG ATGGGCAGTG TGTTTCGCAA GATTACCGAT
GTGGCGCGCG GCCTGATTCT GGTTACCGGG CCGACCGGTT CAGGCAAGTC GACGACCCTG
GCGGCGATGA TCGACTACCT CAACTGCAAC AAGCATCACC ACATCCTGAC CATCGAAGAC
CCTATCGAAT TCGTTCACGA GTCCAAAAAG TGCCTGGTTA ACCAGCGCGA AGTGCACCGC
GACACGCTGG GGTTTTCCGA AGCGTTGCGC TCGGCCCTGC GTGAGGACCC GGATGTGATT
CTGGTGGGCG AGATGCGTGA CCTGGAGACC ATTCGTCTGG CTCTGACCGC TGCTGAAACC
GGCCACCTGG TATTCGGCAC GTTGCACACC ACGTCGGCGG CCAAGACCAT CGACCGGATC
GTCGATGTGT TCCCGGCGCA GGAAAAGTCG ATGATTCGCT CGATGCTGTC CGAGTCGCTG
CACGCGGTTG TCTCGCAGGC GCTGCTCAAG AAGGTTGGCG GCGGGCGCGT GGCGGCGCAT
GAAATCATGA TGGGCACCCC GGCGATTCGT AACCTGATTC GCGAGGACAA GGTGGCGCAG
ATGTATTCGT CCATCCAGAC CGGCGGCTCA TTGGGCATGC AGACGCTGGA CATGTGCCTG
GCCGACCTGG TGAAACGCGG CCTGATTACC CGCGAAAGCG CTCGCGAGCG GGCCAAGGTG
CCGGACAACT TCTGA
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| Protein sequence | MDITELLAFS AKQGASDLHL SAGLPPMIRV DGDVRRINLP PLDAKEVKAL IYDIMTDRQR
QDFEERLETD FSFEVPGVAR FRVNAFNQNR GAGAVFRTIP SKILSMEDLG MGSVFRKITD
VARGLILVTG PTGSGKSTTL AAMIDYLNCN KHHHILTIED PIEFVHESKK CLVNQREVHR
DTLGFSEALR SALREDPDVI LVGEMRDLET IRLALTAAET GHLVFGTLHT TSAAKTIDRI
VDVFPAQEKS MIRSMLSESL HAVVSQALLK KVGGGRVAAH EIMMGTPAIR NLIREDKVAQ
MYSSIQTGGS LGMQTLDMCL ADLVKRGLIT RESARERAKV PDNF
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