| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5016 |
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| Symbol | |
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| ID | 1186701 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 5702150 |
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| End bp | 5703637 |
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| Gene Length | 1488 bp |
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| Protein Length | 495 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637396337 |
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| Product | proline permease |
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| Protein accession | NP_794749 |
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| Protein GI | 28872130 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0591] Na+/proline symporter |
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| TIGRFAM ID | [TIGR00813] transporter, SSS family
[TIGR02121] sodium/proline symporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGTCA GCAACCCTAC CTTGATCACG TTCGTGATCT ACATCGCGGC AATGGTATTG
ATCGGCCTGA TGGCGTATCG CTCCACCAAC AACCTGTCGG ATTACATCCT TGGCGGACGT
AGCCTGGGCA GTGTGGTCAC TGCTCTTTCG GCGGGCGCCT CGGACATGAG CGGCTGGCTG
CTGATGGGTT TGCCGGGGGC TATCTACATG TCCGGCCTGT CGGAAAGCTG GATCGCCATC
GGTCTGATCA TCGGTGCGTA CCTGAACTGG CTGTTCGTCG CCGGCCGTCT GCGCGTGCAG
ACCGAGCACA ACGGTGATGC GCTGACCCTG CCGGATTACT TCAGCAGCCG TTTTGAAGAC
AACAGCGGCC TGCTGCGCAT CATTTCGGCC ATCGTGATTC TGGTGTTCTT CACCATTTAT
TGCGCCTCTG GCATCGTTGC GGGCGCGCGT CTGTTTGAAA GCACCTTCGG CATGTCCTAC
GAAACCGCCC TGTGGGCCGG CGCTGCGGCG ACCATCGCCT ACACCTTCGT CGGTGGTTTT
CTGGCTGTGA GCTGGACAGA CACCGTGCAG GCCACGCTGA TGATCTTCGC CCTCATCCTG
ACGCCGATCA TCGTTCTGCT GGCGACCGGC GGGGTCGACA CGACCTTCCT GGCGATTGAA
GCGAAAGACC CGACCAGCTT CGACATGTTC AAGAACACCA CATTCATCGG CATCATTTCC
CTGCTCGGCT GGGGCCTGGG TTATTTCGGT CAGCCGCATA TCCTGGCGCG CTTCATGGCG
GCGGATTCGG TCAAGTCGAT TGCCAGCGCC CGACGCATTT CTATGGCCTG GATGATCCTG
TGCCTGGGCG GCACCGTGGC GGTCGGCTTC TTCGGCATCG CTTATTTCTC CGCGCACCCG
GAGGTCGCCG GGCCGGTTAC CGAGAACCCG GAGCGGGTGT TCATCGAGCT GGCCAAGCTG
CTGTTCAATC CATGGGTTGC CGGTGTGCTG TTGTCGGCCA TTCTGGCTGC GGTGATGAGT
ACGCTGAGCT GCCAGTTGCT GGTGTGTTCC AGTGCGCTGA CCGAAGACTT CTACAAGGCT
TATCTGCGCA AGGGTGCTTC ACAGCTTGAG CTGGTATGGG TCGGCCGCGC GATGGTGCTG
CTGATCGCGA TCATCGCCAT TTTGCTGGCT GCCAACCCCG AGAACCGCGT GCTGGGTCTG
GTGAGCTACG CCTGGGCGGG CTTCGGCGCA GCATTTGGTC CTGTGGTACT GATTTCCGTG
CTGTGGAAGG GCATGACCCG TAACGGCGCG TTGGCCGGTG TGATGGTCGG TGCAGCCACC
GTGGTGCTCT GGAAGCAATT CAGCACCATG GGCCTGTATG AAATTATCCC CGGTTTCATT
CTTGCCAGCA TTGCCATCGT GGTGTTCAGT CTGATTGGTA CACCGGCATC GGCTTCGATG
AAAGCGCGCT TTCTGGCAGC CGAGCAAGAG TTCAAAGCCA ACCGTTGA
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| Protein sequence | MSVSNPTLIT FVIYIAAMVL IGLMAYRSTN NLSDYILGGR SLGSVVTALS AGASDMSGWL
LMGLPGAIYM SGLSESWIAI GLIIGAYLNW LFVAGRLRVQ TEHNGDALTL PDYFSSRFED
NSGLLRIISA IVILVFFTIY CASGIVAGAR LFESTFGMSY ETALWAGAAA TIAYTFVGGF
LAVSWTDTVQ ATLMIFALIL TPIIVLLATG GVDTTFLAIE AKDPTSFDMF KNTTFIGIIS
LLGWGLGYFG QPHILARFMA ADSVKSIASA RRISMAWMIL CLGGTVAVGF FGIAYFSAHP
EVAGPVTENP ERVFIELAKL LFNPWVAGVL LSAILAAVMS TLSCQLLVCS SALTEDFYKA
YLRKGASQLE LVWVGRAMVL LIAIIAILLA ANPENRVLGL VSYAWAGFGA AFGPVVLISV
LWKGMTRNGA LAGVMVGAAT VVLWKQFSTM GLYEIIPGFI LASIAIVVFS LIGTPASASM
KARFLAAEQE FKANR
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