| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5009 |
|---|
| Symbol | |
|---|
| ID | 1186694 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 5694361 |
|---|
| End bp | 5696559 |
|---|
| Gene Length | 2199 bp |
|---|
| Protein Length | 732 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637396330 |
|---|
| Product | membrane protein, TIGR01666 |
|---|
| Protein accession | NP_794742 |
|---|
| Protein GI | 28872123 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1289] Predicted membrane protein |
|---|
| TIGRFAM ID | [TIGR01666] hypothetical membrane protein, TIGR01666
[TIGR01667] integral membrane protein, YccS/YhfK family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCATCGA AATCTCTCCG TCATACTCTC CGTCGATTGT GGGCGCTGGA TAAATTCAGC
TATAGCGTTC GGGTTTTTAT CGCACTGACC GGCAGCATGG CGCTGTGCTG GTATCAAAAC
GAGATGGCCC TGCTGATCCC GCTGTTCCTG GGGATTATCG CCAGCGCCCT GGCCGAGACC
GATGACAGTT GGCAAGGCCG GCTCAATGCA CTGGCCGTGA CCCTGGTGTG CTTCAGCATC
GCCGCACTCG CTGTAGAGCT GCTGTTCCCC TACCCCTGGC TGTTCGTCTG CTCTCTGGCG
CTGGCCAGCT TCTGCCTGAC CATGCTTGGC GCGCTGGGCG AGCGCTATGG CGCGATTGCC
TACGGCACGC TGATTCTCTC GGTCTACACC ATGATCGGCG TCGATCAGCG CGGCGGTGAG
GTGCTGGACT TCTGGCACGA GCCGATGCTG CTGGTGGCAG GCGCCGCGTG GTACGGCCTG
TTGTCGGTGC TGTGGCAAAT GCTGTTTTCC AACCAGCCGG TGCAGCAGGC GCTGGCGCGG
TTGTTCCGCG AACTGGGGCA GTACCTGAAA CTCAAATCGA CGCTGTTCGA GCCGATTCGC
ACCCTCAATG TGGAGGCCCG CCGCCTGGAA CTGGCGCAGC AGAACGGTCG TGTTGTTGCG
GCGTTGAACT CCACCAAAGA AATCATTCTG CACCGCGTTG GCAGTGGTCG GCCCGGCTCG
AAAGTCAGCC GCTACCTGAA ACTGTATTTC ATCGCTCAGG ACATCCACGA GCGCGCCAGC
TCATCGCACT ACCCTTACAA CTCGCTGGCC GACGCGTTCT TCCATAGCGA TGTGCTGTTC
CGCTGTCAGC GACTGCTGCG TCAGCAAGGC GTTGCCTGTC AGGCGCTGTC AGAGTCCATC
CAGCTGCGTC AGCCGTTCGT GTACGACCCG AGCTTCGCAG AAGCCATGGA AGACCTGCAG
GCCTCGCTTG AGCACCTGCG CATCCAGAGC AACCCGGCAT GGCGCGGCCT GTTGCGCTCG
CTGCGTGCAC TGGCCGCCAA CCTCGGCACG CTGGATCGCC TGATCAGCGA CGCCAGCAAC
CCCGACGCCG TGGCCGACGC CACCGACAGC AGCCTGCTCG ACCGTTCGCC GCGCAACCTC
AAGGACGTCT GGACGCGCCT GCGTTTGCAG ATGACCCCGA CCTCGCTGCT GTTCCGCCAT
GCACTGCGCC TGCCGCTGGC GCTGACCATC GGGTACGCGA TGGTGCACCT GATTCACCCG
TCGCAAGGCT ACTGGATCAT CCTGACCACG GTTTTTGTCT GCCAGCCCAG TTATGGCGCC
ACCCGGCGCA AGCTAGGTCA GCGGATCATC GGCACGGCCA TCGGCCTGAC CGTCGGCTGG
GTGCTGTTCG ATCTGGTCAC CAGCCCGATT CTGCAGTCGA TGTGCGCGGT GCTGGCTGGC
GTGGTGTTCT TCGTTAACCG CACTACCCGC TATACGCTTT CGACCGCCGC CATCACGGTC
ATGGTGCTGT TCTGCTTCAA TCAGGTCGGC GACGGCTACG GGTTGTTCCT GCCACGCTTG
TTCGACACCT TGCTGGGCAG CCTGATCGCC GGGCTCGCAG TGTTCCTGTT CCTGCCCGAC
TGGCAGGGAC GACGCCTGAA CAAGGTGCTG GCCAATACCC TGACCTGCAA CAGCGTGTAT
TTGCGGCAGA TCATGCAGCA ATACGCCAAG GGCAAAAGTG ACGATCTGGC CTACCGACTG
GCCAGGCGCA ACGCGCACAA TGCCGATGCC GCGCTGTCCA CCACCCTGGC CAACATGCTC
ATGGAGCCCG GTCACTTCCG CAAGGAGGCA GACGTCGGTT TCCGCTTTCT GGTGCTGTCA
CACACGCTGC TGAGCTACCT GTCGGGCCTC GGTGCCCACC GCGATACTCA ATTGCCGAGC
GATGTCCGCG AGCACCTGAT CGATAACGTG GGCACCTCAC TGGCAGCCAG TATTGACGAA
ATTGCCGCAG GACTGGCCGA CAAGAAGTCT GTCGCCGTGC AAAGCGACGT CGAGGAAGCG
CTGGCCACTC AGCTGGAACA GCTCCCCGAA GAGATGGACG AAAGCCAGCG TCTGGTACAG
GCCCAACTGG CCTTGATCTG CCGTCAACTG GCGCCGCTGC GCACCCTCGC CGCTCACCTG
ATCAAAGCTC CGGAGGCCCT TGCAGACCGT GCAGTCTGA
|
|---|
| Protein sequence | MASKSLRHTL RRLWALDKFS YSVRVFIALT GSMALCWYQN EMALLIPLFL GIIASALAET
DDSWQGRLNA LAVTLVCFSI AALAVELLFP YPWLFVCSLA LASFCLTMLG ALGERYGAIA
YGTLILSVYT MIGVDQRGGE VLDFWHEPML LVAGAAWYGL LSVLWQMLFS NQPVQQALAR
LFRELGQYLK LKSTLFEPIR TLNVEARRLE LAQQNGRVVA ALNSTKEIIL HRVGSGRPGS
KVSRYLKLYF IAQDIHERAS SSHYPYNSLA DAFFHSDVLF RCQRLLRQQG VACQALSESI
QLRQPFVYDP SFAEAMEDLQ ASLEHLRIQS NPAWRGLLRS LRALAANLGT LDRLISDASN
PDAVADATDS SLLDRSPRNL KDVWTRLRLQ MTPTSLLFRH ALRLPLALTI GYAMVHLIHP
SQGYWIILTT VFVCQPSYGA TRRKLGQRII GTAIGLTVGW VLFDLVTSPI LQSMCAVLAG
VVFFVNRTTR YTLSTAAITV MVLFCFNQVG DGYGLFLPRL FDTLLGSLIA GLAVFLFLPD
WQGRRLNKVL ANTLTCNSVY LRQIMQQYAK GKSDDLAYRL ARRNAHNADA ALSTTLANML
MEPGHFRKEA DVGFRFLVLS HTLLSYLSGL GAHRDTQLPS DVREHLIDNV GTSLAASIDE
IAAGLADKKS VAVQSDVEEA LATQLEQLPE EMDESQRLVQ AQLALICRQL APLRTLAAHL
IKAPEALADR AV
|
|---|
| |