| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5003 |
|---|
| Symbol | rfaF |
|---|
| ID | 1186688 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 5682188 |
|---|
| End bp | 5683222 |
|---|
| Gene Length | 1035 bp |
|---|
| Protein Length | 344 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637396324 |
|---|
| Product | ADP-heptose--LPS heptosyltransferase II |
|---|
| Protein accession | NP_794736 |
|---|
| Protein GI | 28872117 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0859] ADP-heptose:LPS heptosyltransferase |
|---|
| TIGRFAM ID | [TIGR02195] lipopolysaccharide heptosyltransferase II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATTC TGATCGTTGG GCCTAGCTGG GTCGGTGACA TGGTGATGGC GCAAACGCTG
TTCCAGTGCC TGAAACAGCG TCATCCCGAG TGCGAAATCG ACGTGTTGGC CCCTGAATGG
AGCCGTCCGA TACTGGAGCG CATGCCAGAG GTTCGCGCTG CGCTCAGCTT TCCGCTTGGT
CACGGTGCGC TTGAACTGGC GACCCGTCGG CGCATCGGCA AGTCCCTCGC TGGCCAGTAC
GACCAGGCCA TTCTGCTGCC CAACTCGCTG AAATCCGCGC TGGTGCCGTT TTTCGCCGGT
ATCCCGAAAC GCACTGGCTG GCGCGGTGAA TTTCGTTACG GCCTGCTCAA TGACGTGCGC
ACCCTGGACA AGCAGCGCTA CCCGCTGATG ATCGAGCGTT TCATGGCGTT GGCCTTCGAC
AAGGGCACCG AGCTGCCACG TCCTTACCCT CAGCCCAGCC TGCGCATCGA CTCCACGACG
CGCGATGCGG CCTTGGGCAA GTTTGGCCTT AGCCTCGACC GTCCGGTGCT GGCGCTGTGC
CCTGGCGCCG AGTTCGGCGA GTCCAAGCGC TGGCCGGCCG AGCACTACGC GCAAGTGGCC
GAAGCCAGCA TTCGTGAAGG CTGGCAGGTC TGGCTGTTCG GTTCTAAAAA AGATCATCCG
GTCGGTGAGA GCATTCGGCA GGAACTGATC CCCGGCCTGC GTGAAGAGTC CGTCAACCTC
AGCGGCGACA CCTCGCTGGC CGAAGCCATC GACCTGCTGT CGTGTGCCGA CGCCGTGGTG
TCCAACGATT CGGGCCTGAT GCATGTGGCC GCCGCGCTGA ATCGCCCGCT GGTGGCGGTC
TACGGTTCCA CATCGCCAGG CTTCACGCCG CCGCTGGCCG ACGAAGTCGA AGTGGTCCGC
CTGGGCCTGG AATGCAGCCC CTGTTTCGAG CGTACCTGCC GTTTCGGCCA TTACAACTGC
ATGCGTCTGC TTGAGCCGGA CGCCGTGATT CAGGCTCTGA CCCGCCTGAG CAGCACTCCG
GTCGAGGTCG CCTGA
|
|---|
| Protein sequence | MKILIVGPSW VGDMVMAQTL FQCLKQRHPE CEIDVLAPEW SRPILERMPE VRAALSFPLG
HGALELATRR RIGKSLAGQY DQAILLPNSL KSALVPFFAG IPKRTGWRGE FRYGLLNDVR
TLDKQRYPLM IERFMALAFD KGTELPRPYP QPSLRIDSTT RDAALGKFGL SLDRPVLALC
PGAEFGESKR WPAEHYAQVA EASIREGWQV WLFGSKKDHP VGESIRQELI PGLREESVNL
SGDTSLAEAI DLLSCADAVV SNDSGLMHVA AALNRPLVAV YGSTSPGFTP PLADEVEVVR
LGLECSPCFE RTCRFGHYNC MRLLEPDAVI QALTRLSSTP VEVA
|
|---|
| |