Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_5000 |
Symbol | waaP |
ID | 1186685 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 5679194 |
End bp | 5680000 |
Gene Length | 807 bp |
Protein Length | 268 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637396321 |
Product | lipopolysaccharide core biosynthesis protein WaaP |
Protein accession | NP_794733 |
Protein GI | 28872114 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAGTTGT TCCTTGCTGA ACCGTTCAAG AGCCTGTGGG CCGGGCGCGA TGCATTCGCT GAGGTCGAGG GCCTGAGCGG TGAGGTCTAC CGCGAGCTGG AAGGACGTCG CACGCTGCGC ACCGAAGTTG ACGGGCGTGG CTACTTCGTC AAGATCCACC GCGGCATCGG CTGGGGCGAA ATTGCCAAGA ACCTGGCAAC CGCCAAATTG CCGGTGCTGG GGGCAGGCAA GGAATGGGAC GCCATCGAGC GTCTGCATGA GGTCGGTGTG CCGACCATGA CCGCTGTAGC GTACGGCGAG CGTGGCAGCA ACCCCGCCGC GCAGCACTCG TTTATCGTCA CCGAAGAGTT GGCACCGACC ACCAGCCTGG AGGACGTCAG CCTCAACTGG CGCACCGAGC CACCCGAGCC GCGCCTGAAA AGGGCGTTCA TTGCCGAAGT CGCCAGACTG GTCGGGATGA TGCACCGGGC TGGCGTCAAC CATCGCGATT GTTACATCTG TCATTTTCTG TTGCACACCG ACAAGCCGGT GACCGCTGAC GATTTCAGGC TGTCGGTAAT CGATCTGCAC CGTGCCCAGA CGCGTCGGGC GATCACGCCA CGCTGGCGCA ACAAGGACCT TGCGGCGCTG TACTTCTCGG CGCTGGACAT CGGCCTGACC CGGCGCGACA AGCTGCGTTT TCTCAAGGAC TATTTTCAGC TGCCGCTACG CGAGATTCTG CTCAAGGAAG CCGCGCTGCT GACCTGGCTG GATAAAAAAG CCGACAAGTT GTATCAGCGT AAAGTGCGCT ACGGGGATGC GCTCTGA
|
Protein sequence | MKLFLAEPFK SLWAGRDAFA EVEGLSGEVY RELEGRRTLR TEVDGRGYFV KIHRGIGWGE IAKNLATAKL PVLGAGKEWD AIERLHEVGV PTMTAVAYGE RGSNPAAQHS FIVTEELAPT TSLEDVSLNW RTEPPEPRLK RAFIAEVARL VGMMHRAGVN HRDCYICHFL LHTDKPVTAD DFRLSVIDLH RAQTRRAITP RWRNKDLAAL YFSALDIGLT RRDKLRFLKD YFQLPLREIL LKEAALLTWL DKKADKLYQR KVRYGDAL
|
| |