Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4977 |
Symbol | |
ID | 1186662 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 5648897 |
End bp | 5650336 |
Gene Length | 1440 bp |
Protein Length | 479 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637396298 |
Product | outer membrane efflux protein TolC, putative |
Protein accession | NP_794710 |
Protein GI | 28872091 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTGCGCA AACTTTCGTT GGTCGTGGCT GTTTCGTTGG CGTCCAGCGG ACTGACCTGG GCTGCCGACT TGCCGCTGCC AACCAAAACC GGTCTGTTGA ATGTGTATCA GCAGGCGGTA GACAACAACG CCGACCTCGC GGCCTCGCGT GCCGATTACG ATGCCCGCAA GGAAGCCGTG CCACAGGCCC GAGCCGGCCT GCTGCCGAAT ATTTCCGGCA GTGTCCAGAA CACCAACACC CGCACCAGCA TCGACCGCCC CAGCGCCGTG GCGACCCGCA GCGGCACGGT TTATCAGGCC ACCCTGAGCC AGCCGATCTT TCGCGCCGAC CGCTGGTTCC AGTTGCAGGC TGCCGAAGCG GTCAACGAAC AGGCCGCGCT GGAACTGTCG GCCACCGAGC AGAACCTGAT CCTGCAATCG GCGCAGAGCT ATTTCAGTGT GTTGCGCGCG CAGGACAATC TGGCCTCGAC CAAGGCTGAG GAAGCGGCGT TCAAACGCCA GCTCGATCAG GCCAACGAAC GCTTCGATGT CGGTCTGTCA GACAAGACCG ATGTGCTGCA GGCCCAGGCC AGCTACGACA CCTCGCGCGC CAGCCGGCTG ATCGCCAGGC GTCAGGTGGA CGATGCCTTT CAGGCGCTGG TGACCCTGAC CAATCGCGAA TACAACTCCA TCGAAGGCAT CGTGCACACC TTGCCGGTGC TGGCACCAAC GCCCAACGAC GCCAAGGCCT GGGTGGATAC GGCAGCGCAA CAAAACCTCA ACCTGCTGGC CAGCAACTAC GCCGTCAGCG CTGCCGAAGA AACCCTGCGC CAGCGCAAGG CCGGGCACGC GCCCACCCTT GATGCCGTGG CGACTTACCA GCGTGGCGAC AACGATGCAT TGGGTTTCAA CAACCCCAAC TACACCGGGC AAAATTACGG CGGCGACGTC GAGCAACGCA GCATTGGCGT GCAGTTGAAT ATCCCGATCT ACAGCGGCGG CCTGACCAGT TCACAGGTGC GTGAGGCTTA TTCGCGCCTG AGCCAGAGCG AGCAGCGCCG CGAAAGCCTG CGACGTCAGG TGGTGGAAAA CACCCGTAAC CTGCACCGTG CGGTGAACAC TGATGTCGAG CAGGTTCAGG CGCGCAAACA GTCGATCATC TCCAACCAGA GTGCGCTGGA AGCCACGGAA ATCGGCTATC AGGTCGGCAC CCGCAACATC GTCGATGTGC TGGACGCCCA GCGTCAGTTG TATGCCTCGG TGCGTGACTA CAACAACACG CGCTATGACT ACATCCTCGA CAACCTGCGC CTCAAGCAGG CAGCGGGCAC CCTGAACCCG GGCGACTTGC AGGACCTGTC ACGCTACCTC AAACCGGACT ACAACCCGGA CAAGGACTTC CTGCCGCCGG ATTTGGCGAC TGCAGCGCAG AAGAATTTCG AGCGGCCGGC GCAGCGCTGA
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Protein sequence | MLRKLSLVVA VSLASSGLTW AADLPLPTKT GLLNVYQQAV DNNADLAASR ADYDARKEAV PQARAGLLPN ISGSVQNTNT RTSIDRPSAV ATRSGTVYQA TLSQPIFRAD RWFQLQAAEA VNEQAALELS ATEQNLILQS AQSYFSVLRA QDNLASTKAE EAAFKRQLDQ ANERFDVGLS DKTDVLQAQA SYDTSRASRL IARRQVDDAF QALVTLTNRE YNSIEGIVHT LPVLAPTPND AKAWVDTAAQ QNLNLLASNY AVSAAEETLR QRKAGHAPTL DAVATYQRGD NDALGFNNPN YTGQNYGGDV EQRSIGVQLN IPIYSGGLTS SQVREAYSRL SQSEQRRESL RRQVVENTRN LHRAVNTDVE QVQARKQSII SNQSALEATE IGYQVGTRNI VDVLDAQRQL YASVRDYNNT RYDYILDNLR LKQAAGTLNP GDLQDLSRYL KPDYNPDKDF LPPDLATAAQ KNFERPAQR
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