| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4853 |
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| Symbol | |
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| ID | 1186536 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 5498405 |
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| End bp | 5499661 |
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| Gene Length | 1257 bp |
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| Protein Length | 418 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637396173 |
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| Product | type II/IV secretion system protein, putative |
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| Protein accession | NP_794587 |
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| Protein GI | 28871968 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGGAAA AACTGTTTGG CATCTCATCG CGCGGCAGCG GGCAGGCCGA TGATGGCCAG
GGCCTGAAAC TGGTGCTGCA CCGTTACATC ATTGATGGCA TCGAAGAGAG CGGCAAAAAC
TTGCTGGAAG GCTCACGACC GGCTCTGGCG CAATTTGTCA TCGATAAAGT GGCTGAGTAC
GTCGCTCGCC TGCGACTGGC CATCTCGCGT TACGAAATGG AGCGGCTGGC CGAAGAACTG
GTTGATGAGC TGACCGGGTT CGGGCCATTG GAAGTGCTGT TGCGCGACAG TTCGGTCACG
GAAATTCTGG TCAACGGGCC GAGCAAAGTG TTTGTCGAGC GCGATGGCGT GCTGCATCAC
ACCGACCTGC GTTTTATCGA TTCGCATCAC GTCGAACGCG TGATGCAGCG CATTCTCGCC
CCGATGGGTC GGCGCCTGGA CGAGTCTTCG CCGATGGTCG ATGCGCGCTT GCCCGACGGC
AGCCGGGTCA ATGCGATCAT TCCGCCGATT GCGCTGGACG GCCCGTGCCT GTCGATCCGG
AAGTTTCGCA AGGACATGCT CAAGAGCGCC GATCTGGTGG CCATGCAGAC CATCGACCAA
CCCATCTTCG AGTTCTTTCA GGAAGCGGTG GGCAAACGCT GCAACGTGCT GGTCAGCGGC
GGCACCGGCA CAGGCAAGAC CACCATGCTC AACGTGCTGA GCCAGTTGAT CGACAACAAT
CAGCGCCTGG TCACCATCGA AGACGTGGCC GAACTACAAC TCAGCCACCC GCATGTGGTG
CGCCTGGAAA CCCGCCCGCC GAATGCCGAA GGGCATGGCG AGGTGCGCGC CAGCGACCTG
ATCCGCAACT CGCTGCGGAT GCGCCCGGAC CGCATCATCC TCGGCGAGAT CCGTGGCGTT
GAGGTACTGG ACGTTTTGAC GGCCATGAAC ACCGGCCACG ATGGCTCGAT GAGCACGGTG
CACGCCAACA ACGCGCAGGA CGCCTTGCTG CGCCTGGAAA CCCTGGTCGG CCTGACTGGA
CGGTTGATCC CGGAAAAAAC CCTGCGGCAA ATGATCTGCG CAGCGCTGGA CGTGATCATC
CAGTTGGCCC GTCTGCCGGA CGGCCGGCGC TGTGTCAGCG AAGTGGTAGA GGTGGTCGGC
ATACGCGATG ACATCTACGT CACCAACACC TTGTTCCGCC TGGATCGCCG CACCGGGGTC
GGCTTCATGC GCGAGGCCGC GCACGCCGCC GGTGACAAGC TGCGGCCCGG TTACTGA
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| Protein sequence | MPEKLFGISS RGSGQADDGQ GLKLVLHRYI IDGIEESGKN LLEGSRPALA QFVIDKVAEY
VARLRLAISR YEMERLAEEL VDELTGFGPL EVLLRDSSVT EILVNGPSKV FVERDGVLHH
TDLRFIDSHH VERVMQRILA PMGRRLDESS PMVDARLPDG SRVNAIIPPI ALDGPCLSIR
KFRKDMLKSA DLVAMQTIDQ PIFEFFQEAV GKRCNVLVSG GTGTGKTTML NVLSQLIDNN
QRLVTIEDVA ELQLSHPHVV RLETRPPNAE GHGEVRASDL IRNSLRMRPD RIILGEIRGV
EVLDVLTAMN TGHDGSMSTV HANNAQDALL RLETLVGLTG RLIPEKTLRQ MICAALDVII
QLARLPDGRR CVSEVVEVVG IRDDIYVTNT LFRLDRRTGV GFMREAAHAA GDKLRPGY
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