Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4845 |
Symbol | |
ID | 1186528 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 5485965 |
End bp | 5490914 |
Gene Length | 4950 bp |
Protein Length | 1649 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637396165 |
Product | lipoprotein, putative |
Protein accession | NP_794579 |
Protein GI | 28871960 |
COG category | [R] General function prediction only |
COG ID | [COG2373] Large extracellular alpha-helical protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.566822 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTTAAACA AAGGATTGTT TCTGGCTTGC GCGCTCGCGC TGCTGAGCGC CTGTGATTCG TCTACCCCGG ATAAACCAGC GCCCGCCACG GCACCCACCA CCCAGGCAAC GGTTGCCGAT ACCAAGCCCA GGCCCGCAGT CGACCTAGCC GCGCTGAGCA AGCGTTATGC AGGCCGTGAA CTGACGGTCA TCGATGTGTC GGAAATTCAG GTAGACGGCG CAAGCACGCT GTCGGTGAGT TTTTCTGTGC CGCTGGACCC GGAGCAGAAG TTTGCTGAAA AACTGCATCT GGTGGACAGC AAGAACGGCA AGGTCGATGG CGCCTGGGAG CTGTCGGACA ACCTCATGGA GTTGCGCCTG CGCCATCTGG AGCCGCAGCG CAAACTTGTG CTGACGGTCG ATGCCGGGCT GCTGGCGGTC AACAAGGCCA AGCTCGCGGC CGAATACATC AGCCGCCTGG AAACCCGCGA CCTGCAACCC ACTGTCGGCT TCGCCAGTCG TGGCAGCCTG CTGCCGACGC GTCTGGCCGA GGGCTTGCCG GTCATCGCCT TGAACGTCGA CAAGGTCGAT GTCGAATTCT TCCGGGTCAA ACCCGACGCG ATGCCGAACT TCCTCGCCCA GTGGGACGGC GCATCCAGCC TGTCCAGCTA CAGCTCCGAA GAACTGCTGC CTATGGCCGA TCTGGTCTAC GGCGGCCGCT TCGACCTCAA GCCTGCGCGC AACACCCGCG AAACCGTGCT GCTGCCGATT GCCGGCATCA AGGCGCTGCA ACAACCGGGC GTTTACCTCG CGGTCATGCG CGCATCCGGC ACTTACAGCT ACTCGCAACC GGCCACCCTG CTCACCCTCA GCGACATCGG CCTGTCGGTG CACCGTTACA GCAATCGTCT GGATGTCTTC ACCCAGGCAC TCGAGGGCGG CAAGGCTCTG GGCGACGTAA GCGTGGATGT GTACGACGAC AACGGCAAGG TCGTCGCGCA AGGCAAAACC GACAGCGACG GCCACGCCCG ACTGCCGTTG CCCGCCAAGG CTGCAGTGGT GCTGGCGCAC AAAGACGAAC AGACCAGCAT GCTGCGCCTG AACAGCTCGG CGCTGGATCT GGCCGAGTTC GACATTTCCG GCCCGCAGGC GCACCCGCTG CAATTCTTCA TTTTCGGCCC GCGCGACCTG TACCGTCCCG GCGAAACCGT GCTGCTCAAC GGTCTGCTGC GTGACAGCGA CGGCAAAAAC GTCAAACCAC AACCGATCAC CGTCGAAGTG CGCCGCCCCG ACGATCAGGT CAGCCGCAAG TTTGTCTGGG AAGCCGATAG CAGTGGCTTC TACCAGTATC AATTGCAACT TGCCGAAGAA GCCCCGACCG GGCGCTGGCA ACTGGTGTTC GACCTGGGCG ACGGCAAGCC TCAGCTTTAC GAGTTCAAGG TTGAAGACTT CCTGCCTGAG CGTCTGGCTC TGGAACTCAA AGGCAGCGAC GCGCCTGTCG CGCCTGCTGA CAACCCCGAG TTCGACATCA CCGGCCGCTA CCTGTATGGC GCGCCTGCGT CGGGCAACAC CCTGACCGGT CAGGTGTATG TGCGTCCATT GCGCGAAGCG GTGGCCAAAC TGCCGGGCTA TCAGTTCGGC TCGATCACCG AAGAAGACCT CAAGCATGAC ATGGAGGTTG AACCCGTCAC CCTCGATGCC GAAGGCCACT CGACGCTCTC CGTGCAAACC CGGTGGGCAG AGGCCAAATC CCCGCTGCAA CTGATTCTGC AAGCCAGCCT GCAAGAGTCT GGCGGGCGGC CGATTACCCG CCGTCTGGTG CAACCGATCT GGCCCGCCGA GCACCTGCCC GGCGTACGCG CACTGTTTGG CAGCAGCTCC GGTGGCGAAG ACTACGACGA GGAAGCCAGC AAGGGCGAAG CCCAGACCAA CGGTGACGGC CCGGCCGAGT TTGAAATCGT GATGGCCGAT GCCACTGGCA ACAAGCTGGC CGCGGATAAC GTCAAGGTCA GGCTGATCCG TGAGCGTCGC GACTACTACT GGAACTACTC GGCCGATGAC GGCTGGAGCT ACCACTTCAA CGAGAAATTC CTCAACCTGA ACGAGGAAAC CCTCAGCATC ACCAAGGACT CCACGGCCAA AATCAGTTTC CCGGTCGAAT GGGGCCCATA CCGTGTCGAG GTGGAAGACC CTTCCACCGG CATGATCAGC AGCCTGCGTT TCTGGGCCGG TTATCGCTGG CAGGACAACA CCGACGGCGG CGCGGTCAGG CCGGATCAGG TCAAGCTGGC GCTGGACAAA CCGGCCTACA ACGATGGCGA CACCGCCAAA GTCACAGTGA CCCCTCCGGC CGCTGGCAAA GGCTACCTGC TGATCGAGTC CAGCGAAGGT CCGCTGTGGT GGAAGGAAAT CGACGTGCCT GCCGAAGGCA AGTCGTACGA AATCCCGCTC GACAAGCAAT GGGCGCGTCA CGACCTGTAC GTTACCGCGC TGGTGATACG CCCCGGCGAA CGCAAGGCCA ATGTCACGCC CAAGCGCGCC GTGGGTGTGC TGCACCTGCC GCTGGACCGT GCACAACGCA AGCTGGCGCT GACCGTTACC GCGCCGGAAA AAATGCGCCC CAAACAGCCG CTTACTCTCA AGGTTGTCGC CAAAAACGCC GATGGCAGCG TGCCCGAACA AGTGCAAGTG CTGGTGTCGG CGGTGGACGT CGGCATTCTC AACATCACCC GCTACGCCAC GCCCGACCCG TTTGCCAGTC TGTTCGGGCG CAAGCAATAC GGCGCTGACC AACTGGATAT CTATGGCCAG TTGATCGAAG CCGGCCAGGG TCGCCTGGCG AGCATGGCGT TCGGCGGTGA TGCGCTGGCC AAGGGCGGCA AACGCCCGGA CACCAGCGTC ACCATCGTTG CGCTGCAAAG CGCTCCGGTA ACGCTCAATG AAGCCGGTGA AGGTGAGGTC AGCGTCGATA TTCCTGACTT CAACGGCGAA CTACGCGTCA TGGCTCAGGC CTGGACCGAC GACCGCTATG GCATGGCCGA GGCGAAAACC GTGGTGGCTG CGCCGATCAT CGCCGAGCTG TCGACGCCGC GCTTCCTGGC CGGTGGCGAC CAGACCAGTA TCGCGCTGGA CGTCTCCAAC CTGTCGGGCA CAGCACAGAA GCTGGACGTA AAAATCAGCG CCGAAGGCCA GTTGAGCATT CCCGGCGGCG ATCAGAGCAA GCCCTTGCAG CTCAAGCAAG GCCAGCGCGT CACCCTGAAA GTGCCGGTAT TGGCGCAAGG TGGCCTGGGC CAAGGCAAGA TCAAGGTGCT GGTGGAAGGC CTGGAGCTGC CAGGTGAAAA CCTGCCCGCC TTCACCCGCG AATGGACCGT TGGCGTGCGC CCCGCCTACC CGGCGATGCT CAAGCATTAC CGTGCCACCC TCAACGACCA GACCTGGAGC CTGCCGGACG GCGCACTTGA GTCCTTCGAG CCTGCCGGTC GCCAAGCGCT ACTGTCGCTG TCGAGCCGTC CGCCGCTGAA CCTCGGCGAA CAGATTCGGG CACTGAAAGC CTATCCATAC GGTTGTCTGG AACAGACCGC CAGCGGCCTG TATCCATCGC TGTACGCCGA TGCCGCAACC CTCAAACGTC TTGGCCTGAC CGGCGAGCCG GATGCCGAAC GCAAGCGCAA GGTCGAGATC GGCATCGAGC GCCTGCTGGG CATGCAGCGT TACAACGGCA GCTTTGGCCT GTGGGGCTCG GACAGCGACG AAGAGTACTG GCTGACCGCC TACGTCACCG ACTTCCTGCT GCGCGCCCGC GATCAGGGCT TTGCCGTACC TGCGGACTCG CTGAAGAAGG CTAATGAACG TCTGCTGCGC TACTTGCAGG ACGCGGGGCA GATTCAGGTC AATTACAGCC AGAACGCCGA GCACACCCGC TTTGCCGTGC AGGCTTACGC CGGGCTGGTG CTGTCACGCA GTCAACAGGC ACCGCTTGCG GCATTGCGCA GCCTGTTCGA CCGCCGCAGC GATGCGCGCT CGGGCCTGCC GCTGGTGCAA CTGGCCGTGG CGCTGGAGAA GATGGGCGAC AAACCGCGCG CTGATCTGGC CCTTACCGCA GGCCTGGCCG TCGGGCGCAA GAACGAATGG CTGGCCGACT ACGGCAGTTC GCTGCGTGAT CAGGCGCTGA TTCTGGCATT GCTGGAAGAG AACGACATCG CCAAGGACAA GCGCGACGAG CGGCTGTTTG CCCTGGCCGA TGAAGTCGCG GCCAGCCGTT ACCTGTCCAC TCAGGAAAGC AATTCGCTGT TCCTCGCCGG TCGCAACCTG CTGGGCAAAC CGGAGAAGGA CTGGACCGCC AGCATTGCCA GCGGCACCGA AACCCGCGAG CTGAGCAACA AACAGCCAGG CCTCAAGCTG GACGGTGCAC TGCTGGGTTC ACCGCTTACG GTTCACAATC AGGGCAGCGA GCCGCTCTAC CAACAGCTGA CGGTTTCGGG TTACCCGACC CAGGCACCTG CGGCGGGCGG TGAGAACCTG AGCATTCGTC GCGAATACCT GAGCCTGAGC GGCGCGCCGC TGAACGTCGG CGCGCTGAAA ACCGGGCAAC TGGTACTGGT GCATCTGGAG ATCGGTGCCA AGCAGCGTGT GCCCGATGCC TTGGTGGTGG ACTTGCTGCC GGCAGGTCTG GAACTTGAAA ACCAGAACCT GGCGCAAAGC TCGGCCAGCC TGGAAGACGC CAGCGAAGAG GTGAAAACCA TCCGTGAGTC GATGGAAAAC GCCGGGATCA AGCATCAGGA ATATCGCGGT GATCGTTACG TGGCGGCGCT GGATATCGAC GGCAACCGCA GCGTGCACCT GCTCTATCTG GCACGTGCAG TCACACCGGG TACATACCGC GTGCCGCCGC CACAGGTGGA ATCCATGTAC CGCCCGAACT GGCAGGCTCT GGGTGATGCA CCCGCACAGA TGGTGGTAAA GGGCAAATGA
|
Protein sequence | MLNKGLFLAC ALALLSACDS STPDKPAPAT APTTQATVAD TKPRPAVDLA ALSKRYAGRE LTVIDVSEIQ VDGASTLSVS FSVPLDPEQK FAEKLHLVDS KNGKVDGAWE LSDNLMELRL RHLEPQRKLV LTVDAGLLAV NKAKLAAEYI SRLETRDLQP TVGFASRGSL LPTRLAEGLP VIALNVDKVD VEFFRVKPDA MPNFLAQWDG ASSLSSYSSE ELLPMADLVY GGRFDLKPAR NTRETVLLPI AGIKALQQPG VYLAVMRASG TYSYSQPATL LTLSDIGLSV HRYSNRLDVF TQALEGGKAL GDVSVDVYDD NGKVVAQGKT DSDGHARLPL PAKAAVVLAH KDEQTSMLRL NSSALDLAEF DISGPQAHPL QFFIFGPRDL YRPGETVLLN GLLRDSDGKN VKPQPITVEV RRPDDQVSRK FVWEADSSGF YQYQLQLAEE APTGRWQLVF DLGDGKPQLY EFKVEDFLPE RLALELKGSD APVAPADNPE FDITGRYLYG APASGNTLTG QVYVRPLREA VAKLPGYQFG SITEEDLKHD MEVEPVTLDA EGHSTLSVQT RWAEAKSPLQ LILQASLQES GGRPITRRLV QPIWPAEHLP GVRALFGSSS GGEDYDEEAS KGEAQTNGDG PAEFEIVMAD ATGNKLAADN VKVRLIRERR DYYWNYSADD GWSYHFNEKF LNLNEETLSI TKDSTAKISF PVEWGPYRVE VEDPSTGMIS SLRFWAGYRW QDNTDGGAVR PDQVKLALDK PAYNDGDTAK VTVTPPAAGK GYLLIESSEG PLWWKEIDVP AEGKSYEIPL DKQWARHDLY VTALVIRPGE RKANVTPKRA VGVLHLPLDR AQRKLALTVT APEKMRPKQP LTLKVVAKNA DGSVPEQVQV LVSAVDVGIL NITRYATPDP FASLFGRKQY GADQLDIYGQ LIEAGQGRLA SMAFGGDALA KGGKRPDTSV TIVALQSAPV TLNEAGEGEV SVDIPDFNGE LRVMAQAWTD DRYGMAEAKT VVAAPIIAEL STPRFLAGGD QTSIALDVSN LSGTAQKLDV KISAEGQLSI PGGDQSKPLQ LKQGQRVTLK VPVLAQGGLG QGKIKVLVEG LELPGENLPA FTREWTVGVR PAYPAMLKHY RATLNDQTWS LPDGALESFE PAGRQALLSL SSRPPLNLGE QIRALKAYPY GCLEQTASGL YPSLYADAAT LKRLGLTGEP DAERKRKVEI GIERLLGMQR YNGSFGLWGS DSDEEYWLTA YVTDFLLRAR DQGFAVPADS LKKANERLLR YLQDAGQIQV NYSQNAEHTR FAVQAYAGLV LSRSQQAPLA ALRSLFDRRS DARSGLPLVQ LAVALEKMGD KPRADLALTA GLAVGRKNEW LADYGSSLRD QALILALLEE NDIAKDKRDE RLFALADEVA ASRYLSTQES NSLFLAGRNL LGKPEKDWTA SIASGTETRE LSNKQPGLKL DGALLGSPLT VHNQGSEPLY QQLTVSGYPT QAPAAGGENL SIRREYLSLS GAPLNVGALK TGQLVLVHLE IGAKQRVPDA LVVDLLPAGL ELENQNLAQS SASLEDASEE VKTIRESMEN AGIKHQEYRG DRYVAALDID GNRSVHLLYL ARAVTPGTYR VPPPQVESMY RPNWQALGDA PAQMVVKGK
|
| |