Gene PSPTO_4837 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_4837 
Symbol 
ID1186520 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp5477023 
End bp5478678 
Gene Length1656 bp 
Protein Length551 aa 
Translation table11 
GC content60% 
IMG OID637396157 
Productresponse regulator 
Protein accessionNP_794571 
Protein GI28871952 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.978785 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCGAGC TCGAAGATCC TAGCCGCGAT CGTCTCAAGC ATCACTTTGC CCAAAGGGTC 
ATTCATCAGG CTCGGCAGAT TCTGGAGACG TGGCAACGCC TGCAAAAAGC CCAGTGGTCG
GTTGCCGACA TGGCCGAGCT CAAAGAGGCC ACGCTGCGTC TGATGCGTTT TGCCGAGCGC
TTCGAGCAAG CTGAGCATGT GGCCCTGGCT CACGAGATCA ATCAGTCACT GGACGCGGTT
GACGCCAATC GCGGCCGGCT CAACAGCCAC GTCATCACAG AACTCAATCG CCTCATGCAG
CGCCTGTCGC GCACCGGGCT GCGGCATGGC GACCGGCTCG AGCAAACGTC GCTGCCGCCG
CTGCGCAAGC CGGTTTACGT GGTGCTTCAG GACCATGAGC GGGCCGAGCG TCTGGCCAAA
CAGCTGGAGT TTTTCGGTTT GTCGGCCCTT TCACTGCACA GCGTTGCCGA TTTCCAGCGT
GCCATGGCGC AGCGGCACCC GGCGGCTATT GTCATGGACG TCGATTTCAG CGGTCCTGGC
ATGGGCTTGG AGCTGGCCTC GCAGGCGCAG GAAGGGTTGG AGCAAAAGCT GCCGCTGTTG
TTTTTCAGTG TGCATGAAAC CGACACGCCG ACCCGGCTGG CAGCGGTGCG CGCCGGTGGT
GAGGAGTTTC TGACCGGCGC GCTGGAAGCA TCGAGCCTGC TGGAAAAAAT CGAAGTGCTG
ACCTGCGTGG CGCAATACGA GCCTTATAAA GTGCTGATCA TCGATGATTC CCGTGCCCAG
GCTATGCACA CCGAACGCGT GCTGAATGCC GCCGGGATCG TGACGCGGGT GCTCATTGAC
CCTATTCAGG CGATGTCCGA ACTCGCCGAT TTTCAGCCGG ACCTGATCAT TCTCGACATG
TACATGCCCG GCTGTACCGG CACCGAACTG GCCAAGGTCA TTCGCCACAA CGACCGTTAC
GTTAGTGTGC CGATCATTTA CCTGTCGGCC GAGGATGACC AGGACAAGCA GCTCGATGCC
ATGAGCGAAG GCGGCGATGA CTTCCTGACC AAGCCGATCA AGCCGCGCCA CTTGATCACC
ACGGTGCGCA ATCGCGCCGC CAGGGCTCGT AACCTCAAGT CGCGCATGGT TCGTGACAGC
CTGACCGGGC TCTACAACCA CACGCACATC CTGCAACTGC TGGAAGATTG CAGTTTTCGT
TCGCGACGTG AAGGCAAGCC GCTGTGTTTT GCCATGCTCG ATATCGACCA TTTCAAACGG
GTCAACGACA GCCACGGCCA TCCAATGGGG GATCGGGTCA TCAAGAGCCT GGCACTGTTC
CTCAAGCAGC GACTGCGTAA AACCGATTTC ATCGGTCGTT ACGGCGGTGA AGAGTTCGCC
ATTGTCATGC CCGACACCGA CATTCATAAC GCCCACAAGG TGCTCGATGA AATCCGTCAC
CGCTTTGCGG AGATTCACTA CCCGGCGCAG CCTGCGGACC TGTTCTGCAC CTTCAGTGCC
GGCGTGGTTT GCCTCGGTGC AGATGATGAC AGCCTGAGCC TTGCCTCCCA GGCCGACAAC
GCGCTGTATC GCGCCAAGCA TGCAGGGCGC AATCAGGTGC ACTCGGCGCT GGTGCAAGCG
CCTTATCACA TCGTGCTGGC AGAAATCGAG GCCTGA
 
Protein sequence
MTELEDPSRD RLKHHFAQRV IHQARQILET WQRLQKAQWS VADMAELKEA TLRLMRFAER 
FEQAEHVALA HEINQSLDAV DANRGRLNSH VITELNRLMQ RLSRTGLRHG DRLEQTSLPP
LRKPVYVVLQ DHERAERLAK QLEFFGLSAL SLHSVADFQR AMAQRHPAAI VMDVDFSGPG
MGLELASQAQ EGLEQKLPLL FFSVHETDTP TRLAAVRAGG EEFLTGALEA SSLLEKIEVL
TCVAQYEPYK VLIIDDSRAQ AMHTERVLNA AGIVTRVLID PIQAMSELAD FQPDLIILDM
YMPGCTGTEL AKVIRHNDRY VSVPIIYLSA EDDQDKQLDA MSEGGDDFLT KPIKPRHLIT
TVRNRAARAR NLKSRMVRDS LTGLYNHTHI LQLLEDCSFR SRREGKPLCF AMLDIDHFKR
VNDSHGHPMG DRVIKSLALF LKQRLRKTDF IGRYGGEEFA IVMPDTDIHN AHKVLDEIRH
RFAEIHYPAQ PADLFCTFSA GVVCLGADDD SLSLASQADN ALYRAKHAGR NQVHSALVQA
PYHIVLAEIE A