Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4822 |
Symbol | |
ID | 1186505 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 5459896 |
End bp | 5460924 |
Gene Length | 1029 bp |
Protein Length | 342 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637396142 |
Product | lipoprotein, rlpA family |
Protein accession | NP_794556 |
Protein GI | 28871937 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0797] Lipoproteins |
TIGRFAM ID | [TIGR00413] rare lipoprotein A |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGGGCAT CGCCGATTCT TCAATCATTC AAGCTTCTGG CGTTGACTGG CCTGGCAGTG CTGGTCGCCA GTTGCTCGTC GCCGTCACGC ACAACGTCGT CGCAGTCGCC AAAAGGCGGT GCAGTTGTAC GCACCATGCC GGGCCTGGAC ATCAACCGTG CTCACAAGGA CGGCGCGCCG TGGTGGGACG TGGATGTTTC GCGCATCCCC GATGCCACGC CGACCCTGCA CACCGGGGCC TACAAGGCCA ACCCGTACAC CGTGCTGGGC AAGACCTATT TCCCCATGAG CGATTCCAGG CGCTACGTCG CTTCGGGCAC CGCCTCCTGG TATGGCACCA AGTTTCATGG CCAGAACACC GCCAATGGCG AGGTTTACGA CCTGTACGGC ATGAGTGCCG CGCACAAGAC CCTGCCGCTG CCCAGCTACG TCAAAGTGAC CAACCTGGAC AACAACCGCA CGGTGATTCT GCGGGTCAAC GACCGTGGGC CGTTTTATTC GGACCGCATC ATCGACCTGT CCTACGCCGC CGCCAAAAAG CTCGGTTACG CCGAAAGCGG CACTGCGCGG GTCAAGGTCG AAGGTATCGA CCCGCAGGAA TGGTGGGCGC AACGTGGCCG TCCGGCACCG CTGATGCTCA ATCAGCCACA AGTGATGGCC CAGGCAACAC CGCCAGCGCT GTCCACTTCC ACCGGCACCG TCGAACAATA CACACCGCCA CCCCAGCAGC ACGCTGCACC TGTCGTGCCG TTGCAGGTTG ACGCAAAAAA AAACGCTTCA GGACAAGCCG CTGGGCTGTT TCTCCAGGTG GGAGCCTTCG CCAACCCGGA CGCTGCGGAG CTCCTGAGGT CGAAACTGAG CGGGATGGTT CGAGCGCCGG TGTTCGTCAG CTCGATCGCT CGCAATCAGC AAACGCTCTA TCGGGTCCGG ATGGGACCGA TCGACACGCC GGGTGAAGCC CAGCAGCTGC AAAACAGCGT CAGGTCGGCC AATCTGGGCC AGCCGAGCGT AGTGACATCG GATCAGTAA
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Protein sequence | MRASPILQSF KLLALTGLAV LVASCSSPSR TTSSQSPKGG AVVRTMPGLD INRAHKDGAP WWDVDVSRIP DATPTLHTGA YKANPYTVLG KTYFPMSDSR RYVASGTASW YGTKFHGQNT ANGEVYDLYG MSAAHKTLPL PSYVKVTNLD NNRTVILRVN DRGPFYSDRI IDLSYAAAKK LGYAESGTAR VKVEGIDPQE WWAQRGRPAP LMLNQPQVMA QATPPALSTS TGTVEQYTPP PQQHAAPVVP LQVDAKKNAS GQAAGLFLQV GAFANPDAAE LLRSKLSGMV RAPVFVSSIA RNQQTLYRVR MGPIDTPGEA QQLQNSVRSA NLGQPSVVTS DQ
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