Gene PSPTO_4819 details

Gene Information

• Locus tag: PSPTO_4819
• Symbol: lipB
• ID: 1186502
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: -
• Start bp: 5457472
• End bp: 5458128
• Gene Length: 657 bp
• Protein Length: 218 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 637396139
• Product: lipoate-protein ligase B
• Protein accession: NP_794553
• Protein GI: 28871934
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0321] Lipoate-protein ligase B
• TIGRFAM ID: [TIGR00214] lipoate-protein ligase B

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCAATG CTCTGGGCTT TCGTGATCTG GGTCTGATCG ATTACGAAAC CGCCTGGCAC 
GCCATGCAGC GCTTCACCGA TGGGCGTGGC CGCGAGGCTG GCGATGAAGT CTGGCTGGTC 
CAGCACCCGC CGGTCTTCAC TCAGGGGCAG TCCGGCAAGG CCGAGCATTT GCTGCTGCCG 
GGCAATATTC CTGTCGTACA GGTCGATCGT GGCGGCCAAG TGACTTATCA TGGCCCGGGC 
CAGCTGGTCG CTTATTTGAT GCTGGATGTC AGGCGCCTTG GCTTTGGTGT GCGCGATCTG 
GTCACCCGGA TCGAGAACAC GCTCATTGCC TTGCTGGCCG ATTATGGCGT CACGGCTGCG 
GCCAAGGCCG ATGCGCCGGG TGTATATGTC GATGGCGCGA AAATCGCCTC GCTCGGTCTG 
CGCATTCGCA ATGGCTGTTC GTTCCATGGC CTGGCGTTGA ACGTCGACAT GGACCTGGAG 
CCGTTCCGCC GCATCAACCC TTGCGGCTAT GCCGGGCTGG CCATGACCCA ACTGAGCGAT 
CAGGCAGGGC AGATAGAATT TTCCGAGGTA AGTGTCCGAC TGCGTGCGCA GCTCGTCAAA 
CACCTCGACT ACGCTGAGCA GGCGACCCTT ACGGGCGGAA TAAACCAATA TGACTGA 

 

Protein sequence

MANALGFRDL GLIDYETAWH AMQRFTDGRG REAGDEVWLV QHPPVFTQGQ SGKAEHLLLP 
GNIPVVQVDR GGQVTYHGPG QLVAYLMLDV RRLGFGVRDL VTRIENTLIA LLADYGVTAA 
AKADAPGVYV DGAKIASLGL RIRNGCSFHG LALNVDMDLE PFRRINPCGY AGLAMTQLSD 
QAGQIEFSEV SVRLRAQLVK HLDYAEQATL TGGINQYD