Gene PSPTO_4641 details

Gene Information

• Locus tag: PSPTO_4641
• Symbol: mscL
• ID: 1186324
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 5244777
• End bp: 5245223
• Gene Length: 447 bp
• Protein Length: 148 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 637395978
• Product: large conductance mechanosensitive channel protein
• Protein accession: NP_794392
• Protein GI: 28871773
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1970] Large-conductance mechanosensitive channel
• TIGRFAM ID: [TIGR00220] large conductance mechanosensitive channel protein

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCGTGC TTACAGAATT CAAGGCATTC GCGGTCAAAG GTAACGTGGT CGATATGGCC 
GTCGGTATCA TCATTGGCGC GGCATTCGGC AAAATCGTTT CATCGTTCGT CGGCGACGTG 
ATCATGCCAC CACTGGGCCT GCTGATCGGC GGCGTGGACT TCAGCGACCT GGCAGTCACC 
CTGCGTCCTG CGCAAGGCAC AGCGCCTGCG GTGTTGCTGG CGTACGGCAA GTTCATCCAG 
ACCGTCATCG ACTTCATCAT CGTCGCGTTC GCGATCTTCA TGGGCGTCAA GGCCATCAAC 
CGCCTCAAGC GCGAAGAAGC CAAGGCACCG ACCCTGCCGC CAACGCCTTC CAAGCAGGAA 
GTGTTGCTGA GCGAGATTCG CGACCTGCTC AAGGCACAGA ACACACCGGC AGCACCCATT 
ACCGTGGACC CTGCTCGTAC GCTGTAG 

 

Protein sequence

MSVLTEFKAF AVKGNVVDMA VGIIIGAAFG KIVSSFVGDV IMPPLGLLIG GVDFSDLAVT 
LRPAQGTAPA VLLAYGKFIQ TVIDFIIVAF AIFMGVKAIN RLKREEAKAP TLPPTPSKQE 
VLLSEIRDLL KAQNTPAAPI TVDPARTL