Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4640 |
Symbol | radA |
ID | 1186323 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 5243215 |
End bp | 5244582 |
Gene Length | 1368 bp |
Protein Length | 455 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637395977 |
Product | DNA repair protein RadA |
Protein accession | NP_794391 |
Protein GI | 28871772 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1066] Predicted ATP-dependent serine protease |
TIGRFAM ID | [TIGR00416] DNA repair protein RadA |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCAAGG CCAAACGCTT GTACGGCTGC ACCGAATGCG GCGCGACATT TCCCAAGTGG GCGGGCCAGT GTGCTGATTG CGGCGCCTGG AACACACTGG TCGAAACCAT GATCGAAAGC GGTGCCGCCG CGCCTCCCAG CGGGCGCACC GGCTGGACCG GCTCACAGGC GCAGATCAGA ACCCTGGCGC AAGTCAGCGT TGAAGAGATC CCGCGTTTCT CCACCAACTC CGCCGAACTC GACAGGGTGC TCGGTGGCGG TCTGGTGGAT GGTTCTGTGG TGCTGATCGG CGGCGACCCT GGCATCGGCA AGTCGACGAT TCTGTTGCAA ACGCTGTGCA ACATCGCCCA GCGCATGCCT GCGCTGTATG TCACCGGCGA GGAATCCCAA CAGCAGGTGG CCATGCGCGC CCGCCGTCTG GGCCTGCCGC AGGACAAACT GCGGGTCATG ACCGAAACCT GCATCGAAAC CATTATTGCC ACCGCCAAGG TCGAGAAGCC CAAGGTGATG GTGATTGACT CGATCCAGAC GATCTTCACC GAGCAATTGC AGTCCGCACC GGGTGGCGTG TCGCAAGTGC GCGAAAGCGC CGCCTTGCTG GTGCGCTATG CCAAGCAGAG TGGCACCGCG ATTTTCCTGG TGGGGCATGT CACCAAGGAA GGCGCACTGG CGGGGCCGCG TGTGCTTGAG CACATGGTCG ATACCGTGCT GTATTTCGAG GGCGAGTCGG ACGGTCGTCT GCGTTTGCTG CGCGCTGTAA AGAACCGTTT CGGCGCGGTA AACGAACTGG GTGTGTTCGG CATGACCGAC AAGGGCCTGA AAGAAGTGTC CAATCCGTCG GCGATTTTTC TGACCCGTGC GCAGGAAGAA GTCCCCGGCA GCGTGGTCAT GGCCACATGG GAAGGCACCC GGCCGATGCT GGTCGAAGTT CAGGCGCTGG TGGATGACAG CCATATGTCC AATCCGCGCC GCGTAACCCT GGGCCTGGAT CAGAACCGTC TGGCGATGCT GCTGGCGGTG CTGCACCGGC ATGGCGGCAT TCCAACCCAC GACCAGGACG TGTTCCTCAA TGTGGTGGGC GGGGTCAAAG TGCTGGAAAC CGCGTCCGAT CTGGCCTTGA TGGCCGCAGT CATGTCCAGC CTGCGCAATC GCCCGCTGCC GCATGACTTG CTGGTGTTTG GCGAGGTGGG GCTGTCGGGT GAGGTCAGGC CGGTGCCCAG CGGGCAGGAG CGCTTGAAAG AGGCTGCCAA GCACGGCTTC AAACGGGCCA TCGTGCCGAA AGGCAATGCG CCGAAAGAAG CGCCTCCCGG TCTGCAGATC ATTGCGGTCA CGCGTCTGGA ACAGGCGCTG GATGCGCTGT TCGAGTAA
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Protein sequence | MAKAKRLYGC TECGATFPKW AGQCADCGAW NTLVETMIES GAAAPPSGRT GWTGSQAQIR TLAQVSVEEI PRFSTNSAEL DRVLGGGLVD GSVVLIGGDP GIGKSTILLQ TLCNIAQRMP ALYVTGEESQ QQVAMRARRL GLPQDKLRVM TETCIETIIA TAKVEKPKVM VIDSIQTIFT EQLQSAPGGV SQVRESAALL VRYAKQSGTA IFLVGHVTKE GALAGPRVLE HMVDTVLYFE GESDGRLRLL RAVKNRFGAV NELGVFGMTD KGLKEVSNPS AIFLTRAQEE VPGSVVMATW EGTRPMLVEV QALVDDSHMS NPRRVTLGLD QNRLAMLLAV LHRHGGIPTH DQDVFLNVVG GVKVLETASD LALMAAVMSS LRNRPLPHDL LVFGEVGLSG EVRPVPSGQE RLKEAAKHGF KRAIVPKGNA PKEAPPGLQI IAVTRLEQAL DALFE
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