Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4612 |
Symbol | |
ID | 1186295 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 5207887 |
End bp | 5208783 |
Gene Length | 897 bp |
Protein Length | 298 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 637395949 |
Product | transcriptional regulator, LysR family |
Protein accession | NP_794363 |
Protein GI | 28871744 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.681307 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGCTAA GCCTACGCCA GCTACAAATT TTCTGCGCCG TCGCGCAGCA CGGTAGCACC ACCAGCGCCG CCATTTCGGT GTCACTGTCC CAATCTGCAA CCAGCGCCGC ACTGAACGAG TTGGAAAGCG CCTTGGATAC CAGGCTGTTC GACCGTGTAG GCAAGCGTTT AGTGCTGAAC GATAACGGCC ATGCCTTACT GCCTCAAGCC AGAAGGATGC TTGAGAATGC ACAACAGATA GAGGCCAGTT TCTTACCCGG CCATGCCGGG CTGAAGACAC GCTTGCGGGT AGGATGCAGT ACCACGATAG GCAATTATGT TCTGCCATTG ATTCTCGGTG AGCTACGTCA ATCAACACCA CATTTGAGGG TCGATGTCGA CATGGCCAAC AGCATGGCTA TCGCAAGAAG AGTCGCTGAT TTCGAGATTG ATATGGGCCT GATCGAGGGG CCTTGCCACC TGCCCGAACT CAGTGCCGAG CCTTGGCTAA TTGATGAGTT GCTTATTGCC GCAGGCCAAC GGCACCCCTT GGCACTAAAG CAGCAGGTCA CACTTGATGA TCTTCGTACC GCTGAATGGC TACTGCGCGA GCCAGGTTCT GGTACCCGTG AAGAAGTCGA ACAATTGCTG CTGCGTCATT TGCACGATCT CGCCGAAACG CGCCAGATCG GCAGTTCAGA GGCCATCAAG CATACCCTCG CACAAGGCAT CGGCATCAGT TGCCTGTCCC GCTGGGTCGT TCGGGATCTA CTGGCCTCTG AAGTCTTGGT TGAACTGCCG CACGCGTTGC CTGCACTGAC CCGACGTTTT TTTCTGATCC GTCACCGGGA CAAATACATC TCGCCTGGGC TTGAGCGATT CTGGGAAAAA TGCAGTCAAT TCGTGAGCCA GGAGTAG
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Protein sequence | MKLSLRQLQI FCAVAQHGST TSAAISVSLS QSATSAALNE LESALDTRLF DRVGKRLVLN DNGHALLPQA RRMLENAQQI EASFLPGHAG LKTRLRVGCS TTIGNYVLPL ILGELRQSTP HLRVDVDMAN SMAIARRVAD FEIDMGLIEG PCHLPELSAE PWLIDELLIA AGQRHPLALK QQVTLDDLRT AEWLLREPGS GTREEVEQLL LRHLHDLAET RQIGSSEAIK HTLAQGIGIS CLSRWVVRDL LASEVLVELP HALPALTRRF FLIRHRDKYI SPGLERFWEK CSQFVSQE
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