Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4585 |
Symbol | |
ID | 1186268 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 5180018 |
End bp | 5182453 |
Gene Length | 2436 bp |
Protein Length | 811 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637395924 |
Product | ATP-dependent protease, putative |
Protein accession | NP_794336 |
Protein GI | 28871717 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1067] Predicted ATP-dependent protease |
TIGRFAM ID | [TIGR00764] lon-related putative ATP-dependent protease |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.560792 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCCGATT CTGTCGCAGC CAACCTACGC CTGGCGCCAA ACGCGCTGAC CCGTCCGTTT TCCGCTGAGC AGTTCAGCTT TGCGACCACC CACGAGCTTG AACCCTTTCG CGGTGTACTT GGCCAGGAGC GTGCCGTAGA AGCCTTGCAG TTTGGCGTTG CCATGCCGCG CCCCGGTTAC AACGTGTTTG TCATGGGCGA GCCCGGCACT GGCCGCTTTT CGTTCGTCAA ACGCTACCTC AAGGCCGAAG GCAAGCGCAT GCAGGCGCCT TCGGACTGGG TGTACGTCAA TAATTTCGAT GAGCCCCGTG AGCCCAAAGC CCTGGAATTG CCGCCCGGCA CCGCCCATGA GTTTATGGCC GATATCGGCG GTTTGATCGA CAACCTGCTG GTGACCTTCC CGGCAGTGTT CGAGCACCCG TCCTATCAGC AAAAGAAAAG CTCGATCGAC CGTGCGTTCA ATCAGCGCTA TGACCGCGCA CTGGATGTGA TCGAGCGCCT GTCGCTGGAA AAGGACATTG CGCTGTATCG CGACAATTCC AACATCGCGT TCACACCGAT GGCCGATGGC AAGGCGCTGG ACGAAGCCGA GTTCTCGCAG TTGCCCGAGG CCGACCGTGA TCGTTTTCAC GAAGATATTT CCTCCCTTGA GGAACGTCTT AACGAAGAGC TGGCCAGCCT GCCGCAGTGG AAACGCGAGT CCAATAACCA GCTGCGTCAA CTCAATGAAG AAACCATTAC TCTGACCTTG CAGCCGTTGC TGGCGCCGCT TTCGGAAAAA TACGCCGAAA ACGCCGCTGT CTGCGCGTAC CTGCAAGCGA TGCAGGTGTA CCTGCTCAAG ACGCTGGTCG AGCAACTGGT CGACGACGCC AAGACCGATG CCCAGGCGCG CAAGTTGCTG GAAGAGCAGT ACAGCCCGAG CCTGGTGGTC GGAAACACCC GTGACGGCGG CGCGCCGGTG GTGTTCGAGC AGCATCCCAC GTACGACAAC CTGTTCGGGC GCATTGAATA CAGCACCGAT CAGGGCGCGC TGTACACCAC CTACCGCCAG TTGCGCCCCG GCGCGCTGCA CCGTGCCAAC GGTGGCTTCC TGATTCTGGA AGCGGAAAAA ATGCTCAGCG AGCCGTTTGT CTGGGATGCA CTCAAACGTA CCCTGCAATC ACGCAAGCTG AAAATGGAGT CGCCGCTGGG TGAACTGGGC CGTGTGGCAA CCGTGACGCT GACGCCGCAG GTGATCCCGT GGAACGTCAA GATCATCATC ATTGGCTCCC GTTCGCTGTA TTACACCCTG CAAGACCTCG ATCCTGACTT TCAGGAGATG TTCCGGGTGC TGGTCGATTT CGACGAAGAA ATCCCGATGG TCGACGAGAC GCTGGAGCAG TTCGCGCAAT TGCTGAAAAC CCGTACCTCT GAGGAGGGCA TGGCGCCCCT GACCGCCGAT GCGGTGGCAC GTCTGGCGAC CTACAGTGCC CGACTGGCCG AGCATCAGGG CCGTTTGTCG GCGCGCATCG GGGACCTGTT TCAACTGGTC AGCGAAGCCG ACTTTATCCG CCAACTGGCC AACGATGACA AGACCGACGC CGGGCACATC GAACGTGCGC TCAAGGCCAA GGCCACGCGC ACCGGAAGGG TTTCTGCGCG GATTCTCGAT GACATGATGG CCGGCGTGAT CCTCATCGAT ACCGACGGCG CAGCGGTCGG CAAGTGCAAC GGCCTGACGG TTCTGGAGGT CGGTGATTCG GCGTTTGGTG TGCCGGCGCG TATTTCCGCG ACGGTCTATC CGGGTGGCAG CGGCATCGTC GATATCGAGC GTGAAGTCAA TCTGGGCCAG CCGATCCACT CCAAGGGCGT GATGATCCTC ACCGGTTACC TGGGTAGCCG TTACGCCCAA GAGTTCCCGC TGGCGATCTC CGCCAGTATC GCGCTTGAAC AGTCCTACGG TTACGTGGAC GGCGACAGTG CGTCGCTGGG CGAGGCCTGC ACGTTGATCT CGGCGCTGTC GCGCACGCCG CTCAAGCAGT GTTTTGCGAT TACCGGTTCC ATCAACCAGT TCGGTGAAGT GCAGGCGGTG GGCGGGGTCA ACGAGAAGAT CGAAGGTTTC TTCCGCCTTT GCGAAGCGCG TGGCCTGACG GGTGAGCAGG GCGCAATCAT CCCGCATGCC AACGTCACTA CCCTGATGCT TGATGAACGC GTGGTTCAAG CCGTGCGTGA CGGGCAGTTC CACATCTACG CAGTGCGTCA GGCTGACGAG GCCTTGAGCC TGCTGGTCGG TGAGCCCGCC GGTGCGCCTG ACGAGAACGG CGAGTTTCCG CAAGGCAGCG TCAATGCGCG CGTGGTGGAG CGCTTGCGTG ATATCGCCGA AATGCTCAGC GACGAAGACC TCAAGGAAGA GCTGGAAAAG GAGCCTGCGC AACTGCAACC CGAGCTGAAA ATCTGA
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Protein sequence | MPDSVAANLR LAPNALTRPF SAEQFSFATT HELEPFRGVL GQERAVEALQ FGVAMPRPGY NVFVMGEPGT GRFSFVKRYL KAEGKRMQAP SDWVYVNNFD EPREPKALEL PPGTAHEFMA DIGGLIDNLL VTFPAVFEHP SYQQKKSSID RAFNQRYDRA LDVIERLSLE KDIALYRDNS NIAFTPMADG KALDEAEFSQ LPEADRDRFH EDISSLEERL NEELASLPQW KRESNNQLRQ LNEETITLTL QPLLAPLSEK YAENAAVCAY LQAMQVYLLK TLVEQLVDDA KTDAQARKLL EEQYSPSLVV GNTRDGGAPV VFEQHPTYDN LFGRIEYSTD QGALYTTYRQ LRPGALHRAN GGFLILEAEK MLSEPFVWDA LKRTLQSRKL KMESPLGELG RVATVTLTPQ VIPWNVKIII IGSRSLYYTL QDLDPDFQEM FRVLVDFDEE IPMVDETLEQ FAQLLKTRTS EEGMAPLTAD AVARLATYSA RLAEHQGRLS ARIGDLFQLV SEADFIRQLA NDDKTDAGHI ERALKAKATR TGRVSARILD DMMAGVILID TDGAAVGKCN GLTVLEVGDS AFGVPARISA TVYPGGSGIV DIEREVNLGQ PIHSKGVMIL TGYLGSRYAQ EFPLAISASI ALEQSYGYVD GDSASLGEAC TLISALSRTP LKQCFAITGS INQFGEVQAV GGVNEKIEGF FRLCEARGLT GEQGAIIPHA NVTTLMLDER VVQAVRDGQF HIYAVRQADE ALSLLVGEPA GAPDENGEFP QGSVNARVVE RLRDIAEMLS DEDLKEELEK EPAQLQPELK I
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