Gene PSPTO_4553 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_4553 
Symbol 
ID1186236 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand- 
Start bp5143007 
End bp5143570 
Gene Length564 bp 
Protein Length187 aa 
Translation table11 
GC content62% 
IMG OID637395894 
ProductDNA-binding response regulator 
Protein accessionNP_794306 
Protein GI28871687 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG4567] Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.023221 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTGACG ATGACATCCA GGTCGAAGGC GAAGAGCTGC CGCACCTGTT GCTGGTCGAT 
GACGACGCGA CATTCACCCG TGTGATGGCG AGGGCCATGA GCCGTCGCGG TTTTCGCGTT 
AGCACCGCAG GTTCCGCTGA AGAAGGCCTG GCACTGGCGC AGCAGGATAT TCCTGAATAT 
GCCGCGCTGG ACCTTAAAAT GGATGGCGAT TCCGGTCTGG TGCTGCTGCC CAAACTGCTG 
GAAATGGACC CGGACATGCG CGTGGTGATT CTCACCGGTT ATTCGAGCAT CGCCACGGCG 
GTCGAGGCCA TCAAGCGCGG CGCGTGCAAT TACCTGTGCA AGCCGGCGGA TGCCGACGAT 
GTGCTGGCGG CCTTGCTGTC CGAGCACGCC AACCTCGACA CCCTGGTGCC CGAGAATCCG 
ATGTCGGTGG ACCGCTTGCA GTGGGAGCAC ATTCAGCGCG TGCTGACCGA GCACGAAGGC 
AATATTTCGG CGACCGCGCG GGCGCTGGGC ATGCACCGCC GGACCTTGCA GCGCAAGTTG 
CAGAAGCGCC CGGTCAGGCG TTGA
 
Protein sequence
MSDDDIQVEG EELPHLLLVD DDATFTRVMA RAMSRRGFRV STAGSAEEGL ALAQQDIPEY 
AALDLKMDGD SGLVLLPKLL EMDPDMRVVI LTGYSSIATA VEAIKRGACN YLCKPADADD 
VLAALLSEHA NLDTLVPENP MSVDRLQWEH IQRVLTEHEG NISATARALG MHRRTLQRKL 
QKRPVRR