| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4543 |
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| Symbol | |
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| ID | 1186226 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 5131860 |
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| End bp | 5133683 |
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| Gene Length | 1824 bp |
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| Protein Length | 607 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637395884 |
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| Product | GAF domain/GGDEF domain/EAL domain protein |
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| Protein accession | NP_794296 |
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| Protein GI | 28871677 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain
[COG2203] FOG: GAF domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.38768 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGCCA GTGCCCCCAT TCCCCTGAAT GAAACGCAAC GTCTGCTGCG TATTCAGGAG
CTGTGCGTAC TTGAAGACAC CTCCGACGAG GTGTTCGACG AGATCGTCGC GATGACCGCC
GAGTTTTTCC AGACGCCCAT TGCCCTGGTC TCGATCGTCG ATGAACATCG CCAGTGGTTC
CGCGCCAGAG TGGGTCTCAG TGCGCGGGAG ACACCGCGCA ACGTGTCGTT CTGCGCCTAC
ACAATCCTCT CCGACACGCT GTTCGAAATC CCCGATGCGA CGCTCGATGA GCGGTTCATG
AACAACAGCC TGGTGACCGG CCATCCCGAC ATCCGCTATT ACGCAGGTGC TCCGCTGATC
ACCGACGACG GCCTTGCCCT GGGCAGCCTG TGCGTGATCG ACACCAAGCC GCGTGAGCCG
ATGAGCGAGC ACCAGACGCA GATGCTCAAG CGTTTCGCCT CGCTGGTCAT GAAGCGCATT
GTCAGCCTGC GACTCAGTTG CTTCATCGAC CAGCCTACCG GCCTGTTCAA CCGCTCGCGC
CTGCAGGAAG ACATTCATGA GGCGCTGGCA TCGAGCGTTG ATTATCAACT GGTCGTGGTG
GACATGATTA CCTCGGCGTT CTTAAACGAC ATCGTCAAGG CGCTGGGTTA CGATTTCTCT
CAGGACCTGG TGACGGCGAT CAAGGAGCGC ATAGAGAGTC TGTTGCCGAG GACTTGCTCG
CTGTACAAGG TCGGGCCGAC CCGTTTCGGC TTTCTGCTGC CTGGAGACCG TCCGCCTGAA
CACCTGTTTC GCACCATCCT CGAAGACTTT GAGACGCCAG TCGAGTGCCG GGGCATTCCG
GTGCAGATGC AGGTCGGGCT CGGGGTTGTG ACCCTGAACC GCGACCCTAA CGAAGAGCAG
GACTGGATGC GTATGGTCAT CAGCGCCGCC GACGACGCAC GCGACCGCGA CCTTGGCTGG
GCGATATACG AGCCGCACTT CGATGCTGCT CAGCAACGCG CGTTCAAGCT GCTCAGCTCA
TTGACCAGCG CGGTGCACTC GCATGATCAG TTGCGCCTGG TCTATCAACC GCGTATCGAC
CTGGAGACCG GCCTGTGCAC GTCGGTGGAA GCCTTGCTGC GCTGGAATCA CCCGACGCTC
GGCCCCATCG GGCCTGCCGA GTTCGTGCCG CTGGCCGAGA AGACCGCACT GATGCGCCCG
TTGAGTCTGT GGGTATTGAC GAGCGCCATT GAGCAGGCAG CCCGGTGGCA GCAACAGGGC
TTCCATTTCC GTATTGCCAT CAACGTGACC CCCGAGGACC TCACCGGCCC GGCGTTTACC
GACCGGATGG TGCGGCTGTT GGGTCAGCAC AAGATAGACC CCACGCGCTT CGAGCTGGAA
TTCACCGAAG GCGCATTGAT GCACAACCCT GCCGAAGTGC GTCATCAGCT GGAGCGCATG
CGGCAGATGG GCATGGATGT GGCGATTGAC GACTTCGGCA CGGGCTACAG CAACTGGAAT
TACCTGCGGC AACTGCCCGC GACCACGGTC AAGCTTGACC AGTCGCTGAT TCGTAACCTG
GCCTCCGACA AGACTGATCA GCGTCTGGTC AAGGCATTGA TCGGGCTGGC CAAGAAGCTC
GGCTATTGCG TGGTGGCCGA AGGCATCGAG ACCGATGAAA TTCGTCGGCT GGTCAAGCAG
TGGGGTTGTG ACGAAGGCCA GGGCTACCTG ATTGCCAAAC CCATGGAAGC CGACGCCGTG
CTGGGCTGGC TCGGCCCGGA CCGCCGCCTG CAAAGTGTCA CAGAAGCGGC CGAAGCGGCC
GTCATCCGCG ACAAACGGTT ATAA
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| Protein sequence | MNASAPIPLN ETQRLLRIQE LCVLEDTSDE VFDEIVAMTA EFFQTPIALV SIVDEHRQWF
RARVGLSARE TPRNVSFCAY TILSDTLFEI PDATLDERFM NNSLVTGHPD IRYYAGAPLI
TDDGLALGSL CVIDTKPREP MSEHQTQMLK RFASLVMKRI VSLRLSCFID QPTGLFNRSR
LQEDIHEALA SSVDYQLVVV DMITSAFLND IVKALGYDFS QDLVTAIKER IESLLPRTCS
LYKVGPTRFG FLLPGDRPPE HLFRTILEDF ETPVECRGIP VQMQVGLGVV TLNRDPNEEQ
DWMRMVISAA DDARDRDLGW AIYEPHFDAA QQRAFKLLSS LTSAVHSHDQ LRLVYQPRID
LETGLCTSVE ALLRWNHPTL GPIGPAEFVP LAEKTALMRP LSLWVLTSAI EQAARWQQQG
FHFRIAINVT PEDLTGPAFT DRMVRLLGQH KIDPTRFELE FTEGALMHNP AEVRHQLERM
RQMGMDVAID DFGTGYSNWN YLRQLPATTV KLDQSLIRNL ASDKTDQRLV KALIGLAKKL
GYCVVAEGIE TDEIRRLVKQ WGCDEGQGYL IAKPMEADAV LGWLGPDRRL QSVTEAAEAA
VIRDKRL
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