| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4541 |
|---|
| Symbol | |
|---|
| ID | 1186224 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 5129126 |
|---|
| End bp | 5130751 |
|---|
| Gene Length | 1626 bp |
|---|
| Protein Length | 541 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637395882 |
|---|
| Product | methyl-accepting chemotaxis protein |
|---|
| Protein accession | NP_794294 |
|---|
| Protein GI | 28871675 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.726322 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATCTTA GATCGTTAAA CATTTCGCGC CGGGCCTCCT TGTGCTTCGG CATCATCACC
GTACTGTTGA TCGGCCTGGG AGGATTTTCC TATGTGCAGA TCGACCAACT GCGCACGGCC
GAGCAGAACA TCGAAGAGAA TTCGTTGCCC AGCATTCAGG TCGTCGATGA CATCCAGATC
GCTCTGCTTC ACGCCCGGCT GGAAAGCATC AGAATGCTCG CCAGTACCGA CCCCGCCGTG
CACAGCACAG CGGAGGCAAA AGCTCGGGAA GCGATCGAGG CGCTTCGCTC AAGCAGCGAG
TTCTATCGGA AAAATCTGAT TTCAGGTGCG ACCGACCTGG CGCAATTCGA AGACGCCAAC
AGCAAGATGG GGGCCTACAT CGACGGCGTG AAACAGATCA TCGCCATGGA CAGTTCCGAT
CATGAAAAAG CCCTTTCCTT TGCGAACGCA GAGCAGGTCG AGCGCGCCAA CGCCTATCAG
GAAAAACTCA CCACCCTGCG CGAGCAAAAT GCCGAGGAAG CCGTAAGCTC CGGTAAAGAT
GCCACGGCGG TTTATAACCA CAGCGTCAAC GTATTACTGA CTGTTGTCAT TGCAGCATCG
CTGCTGACGG TGGTGCTGGC AATAGCCCTG ACCCGCAGCA TTGTCGATCC GATCAGCGTC
TCGCTGAAGC TGGCCGAAGA CATCGCCGCA GGCGACCTGA CCCGGCAGTT GAGCGTTGTC
GGCAGCGACG AAGCATCACG GCTGATGAAC GCACTGAACA CGATGTCGGG AAACCTGCGC
AGCACCATTC ACGAAATCTC CGGCGCCTCT GCGCAACTCA GCACTGCCGC TGTCGAGATG
ACCTCGATCA CTGAAAGTGC AGACCGGACC TTGCAACAAC AGAACAGCGA GATCGAACAG
GCGGCCACCG CAGTAAACGA AATGAGTGCC GCCGTGGAAG AAGTTGCTCG TAACGCTACG
TCCACGTCCG AGGCCGCCAG GCAGTCGAGC CTTTCCGCCG ACCTGGGCAA CCAGCGTGTG
ACTGAAACCC TGAGCGCCAT GCAAAAGCTC ACCGGGCTGG TCGAAGGCTC ATCGGAGCAG
GTCACGGCAC TCGCCGGCCA GGCGCAGGAC ATCAGCAAAG TATTGAGCGT GATTCGCGGC
ATTGCAGAAC AGACCAACCT GCTGGCGCTC AACGCGGCGA TCGAAGCGGC CCGTGCCGGC
GAGCAGGGTC GCGGCTTTGC CGTGGTGGCG GACGAAGTGC GGGCACTGGC GCATCGCACG
CAAACCTCCA CGCAGGAAAT AGAGCAGATG ATTTCGGCGA TTCAGGCCGG TTCGTCCGCG
ACCGTGGAGT CCATGCAAAA GAGCACACAG GAAGTTCACA GCACGCGCAA GACAGCCGAA
GGTGCGGGCG AATCGCTGCG TCAGATCACC GATTCGGTGC TGGAGATCAA CAACCGCAAC
CTGCAGATTG CCACGGCATC AGAACAACAG GCGCATGTGG CCCGTGACGT AGACCGCAGC
CTGGTCAGCA TCCGTGACCT GGCCGTGCAG AGCAGTGAAG GTACTCGCCA GACGCTGGTG
GCCAGTAACG AACTGTCGCA GCTGGCCGTC AACCTGAACG ATCTGGTACT GCGCTTCAAG
ACGTGA
|
|---|
| Protein sequence | MNLRSLNISR RASLCFGIIT VLLIGLGGFS YVQIDQLRTA EQNIEENSLP SIQVVDDIQI
ALLHARLESI RMLASTDPAV HSTAEAKARE AIEALRSSSE FYRKNLISGA TDLAQFEDAN
SKMGAYIDGV KQIIAMDSSD HEKALSFANA EQVERANAYQ EKLTTLREQN AEEAVSSGKD
ATAVYNHSVN VLLTVVIAAS LLTVVLAIAL TRSIVDPISV SLKLAEDIAA GDLTRQLSVV
GSDEASRLMN ALNTMSGNLR STIHEISGAS AQLSTAAVEM TSITESADRT LQQQNSEIEQ
AATAVNEMSA AVEEVARNAT STSEAARQSS LSADLGNQRV TETLSAMQKL TGLVEGSSEQ
VTALAGQAQD ISKVLSVIRG IAEQTNLLAL NAAIEAARAG EQGRGFAVVA DEVRALAHRT
QTSTQEIEQM ISAIQAGSSA TVESMQKSTQ EVHSTRKTAE GAGESLRQIT DSVLEINNRN
LQIATASEQQ AHVARDVDRS LVSIRDLAVQ SSEGTRQTLV ASNELSQLAV NLNDLVLRFK
T
|
|---|
| |