| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4468 |
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| Symbol | cafA |
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| ID | 1186149 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 5032433 |
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| End bp | 5033890 |
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| Gene Length | 1458 bp |
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| Protein Length | 485 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637395808 |
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| Product | ribonuclease G |
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| Protein accession | NP_794222 |
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| Protein GI | 28871603 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.533978 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGAAG AGATTCTGAT CAACATCACC CCGATGGAAT CGCGGGTGGC AGTGGTAGAA
AACGGTGTAC TGCAAGAGGT GCACGTCGAA CGCACCCAGC GTCGCGGCAT TGTCGGCAAC
ATCTACAAAG GCAAGGTGGT GCGGGTGTTG CCTGGCATGC AGGCGGCGTT CATCGACATC
GGTCTGGATC GCGCCGCATT CATTCATGCA TCGGAAATTT CCATGCGCGA AGGGCCTGCC
GTCGAGAGCA TTGCGTCGCT GGTGCATGAC GGCCAGAGTC TGGTGGTGCA GGTCACCAAA
GACCCGATTG GCAGCAAAGG CGCACGCCTG ACCACGCAGC TGTCGATTCC GTCGCGGTAT
CTGGTGTACA TGCCACGTAC TGCCCACGTC GGGATTTCTC TGAAGATCGA AGACGAGGCC
GAGCGGGAGC GACTGAAAAA AGTTGTCAGC GATTGTGTCG CCCAGGAAGG CATCAAAGAG
GCCGGTGGCT TCATTTTGCG CACCGCTGCG GAAGGCGCCG GTGCCGACGA AATCCTCATG
GACATTCGTT ATCTGCGCAG GCTCTGGGAC CAGATCGGCG ATCAGATCAA GACCGTCAGC
CCACCCACCG TGATCTACGA AGACCTGGGC CTGGCATTGC GTACCTTGCG TGACCTGGTC
AGCCCGCGAA TCGAAAAAAT CCGCATTGAC TCACGGGAGA CGTTTCAGAA AACCACACAG
TTCGTGGCTG AACTGATGCC TGAAATCGCC GACCGTCTTG AGCATTACCC GGGCGAGCGG
CCGATTTTCG ATCTGTACGG CGTCGAAGAC GAAATCCAGA AAGCCCTGGA GCGCAAGGTG
CCGCTCAAGT CCGGCGGTTA TCTGGTGATC GATCCGGCCG AGGCGATGAG CACCATCGAC
GTCAATACCG GTGCGTTTGT CGGGCATCGC AACCTGGAAG AAACCATTTT CAAGACCAAC
CTGGAGGCGG CGACAGCCAT CGCCCGCCAG CTGCGTCTGC GCAATCTGGG CGGCATCATC
ATTATCGATT TCATCGACAT GGAAGACGGT GAACACCAGC GTCAGGTGCT GCGCACGCTG
GAAAAACAGC TGGAGCGCGA TCACGCCAAG ACCAACATCA TCGGTATTAC CGAGCTGGGT
CTGGTGCAAA TGACGCGCAA GCGCACCCGC GAAAGTCTCG AGCAGGTGCT GTGCGAGCCC
TGCCATTGCT GCGTGGGCCG GGGCAAGCTG AAAACCCCGG AGACCATCTG TTACGAAATC
TTCCGGGAAA TCCTGCGCGA AGCCAGGGCC TATCAGGCAG TGGGTTATCG CGTTCTGGCC
AATCAGCGCG TGGTGGACCG CTTGCTCGAC GAAGAGTCGG GCAACGTGGC TGAGCTGGAG
AGCTTTATTG GCCGGACCAT CCGTTTTCAG GTAGAAACCA TGTACTCGCA GGAACAATAC
GACGTGGTGC TGCTCTGA
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| Protein sequence | MSEEILINIT PMESRVAVVE NGVLQEVHVE RTQRRGIVGN IYKGKVVRVL PGMQAAFIDI
GLDRAAFIHA SEISMREGPA VESIASLVHD GQSLVVQVTK DPIGSKGARL TTQLSIPSRY
LVYMPRTAHV GISLKIEDEA ERERLKKVVS DCVAQEGIKE AGGFILRTAA EGAGADEILM
DIRYLRRLWD QIGDQIKTVS PPTVIYEDLG LALRTLRDLV SPRIEKIRID SRETFQKTTQ
FVAELMPEIA DRLEHYPGER PIFDLYGVED EIQKALERKV PLKSGGYLVI DPAEAMSTID
VNTGAFVGHR NLEETIFKTN LEAATAIARQ LRLRNLGGII IIDFIDMEDG EHQRQVLRTL
EKQLERDHAK TNIIGITELG LVQMTRKRTR ESLEQVLCEP CHCCVGRGKL KTPETICYEI
FREILREARA YQAVGYRVLA NQRVVDRLLD EESGNVAELE SFIGRTIRFQ VETMYSQEQY
DVVLL
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