Gene PSPTO_4410 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_4410 
SymbolmurD 
ID1186091 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp4977421 
End bp4978767 
Gene Length1347 bp 
Protein Length448 aa 
Translation table11 
GC content62% 
IMG OID637395750 
ProductUDP-N-acetylmuramoylalanine--D-glutamate ligase 
Protein accessionNP_794164 
Protein GI28871545 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase 
TIGRFAM ID[TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTCCCTGA TCGTTTCCGA CCGCTTCCGC ATTGTTGTGG GGCTTGGCAA GAGTGGCATG 
TCCCTGGTTC GCTTCCTGGC GAACCGGGGC GTGTCCTTTG CTGTGGCCGA CACGCGGGAA
AATCCTCCTG AGCTGGCGAC TTTGCGTCGT GACTATCCTC AGGTGGAAGT GCGGTGTGGC
GAACTGGACG TGGACTTCCT CTGCCGTGCC GACGAGCTTT ATGTCAGCCC TGGTCTGGCC
CTGGCCACAC CGGCCTTGCA GCAGGCGCAT GCACGCGGCG CCAAGCTGTC CGGCGACATC
GAACTGTTTG CCCGTTACGC CAAGGCACCG GTGATTGCGA TTACCGGTTC CAACGCGAAA
AGCACCGTGA CCACGCTGGT CGGCGAGATG GCCGCAGCTG CCGGCAAGCG TGTTGCTGTG
GGCGGCAACC TGGGCACCCC GGCGCTGGAC CTGCTCAGCG ATGATGTCGA GTTGTACGTG
ATGGAATTGT CCAGTTTTCA GCTCGAAACC ACTGATCAGC TCAATGCCGA AGTGGCGACC
GTGCTGAACA TCAGCGAAGA CCATATGGAC CGTTATTCCG GTCTGCCGGC CTATCACCTC
GCCAAGCACC GTATTTTCCG TGGCGCGCGG CAAGTAGTGG TCAATCGGCA GGACGCGCTG
TCCCGTCCGT TGATCGGCGA AGGCCTGCCT TGCTGGACGT TCGGCCTCAA CAAGCCTGAC
TTCCACGGCT TTGGTCTGCG TGAAGAGAAC GGCGAAAAAT TCCTGGCATT CCAGTTCGAG
AACCTGATGC CGGTGAGCGA GCTGAAAGTT CGCGGCGCAC ACAATCAGGC TAACGCACTG
GCAGCCCTGG CGCTGGGGCA TGCCGTGGGC CTGCCGTTCG ACGCCATGCT TTCCAGCCTG
CGTGAGTTCA CCGGCCTTGA GCACCGCTGC CAATGGCTGC GTGAGCGCAA TGGCGTGGAC
TACTACAACG ATTCCAAGGC CACCAACGTG GGTGCTGCAC TGGCCGCTAT CGAAGGCCTG
GGCTCGGATA TCGGCGGCAA GCTGGTGTTG ATCGCCGGTG GCGATGGCAA AGGTGCCGAC
TTCAGCGGCC TGCGTGCCCC CGTGGCTAAA TACTGCCGCG CTGCGGTGTT GCTGGGTCGC
GATGCCGAGC TGATTGCCCA GGCGCTGGGT GATGCCGTGC CGCTGATTCG TGTCGACACG
GTTCAGGCGG CTGCCGAGCG CAGCGCCGAG CTGGCTCAGC GCGGCGATGC CGTGTTGCTT
TCCCCTGCAT GCGCCAGTCT GGACATGTTC AAGAATTATG AAGAGCGCGG ACGTGTGTTC
GCGCAGGCAG TGGAGTGCTT GTCATGA
 
Protein sequence
MSLIVSDRFR IVVGLGKSGM SLVRFLANRG VSFAVADTRE NPPELATLRR DYPQVEVRCG 
ELDVDFLCRA DELYVSPGLA LATPALQQAH ARGAKLSGDI ELFARYAKAP VIAITGSNAK
STVTTLVGEM AAAAGKRVAV GGNLGTPALD LLSDDVELYV MELSSFQLET TDQLNAEVAT
VLNISEDHMD RYSGLPAYHL AKHRIFRGAR QVVVNRQDAL SRPLIGEGLP CWTFGLNKPD
FHGFGLREEN GEKFLAFQFE NLMPVSELKV RGAHNQANAL AALALGHAVG LPFDAMLSSL
REFTGLEHRC QWLRERNGVD YYNDSKATNV GAALAAIEGL GSDIGGKLVL IAGGDGKGAD
FSGLRAPVAK YCRAAVLLGR DAELIAQALG DAVPLIRVDT VQAAAERSAE LAQRGDAVLL
SPACASLDMF KNYEERGRVF AQAVECLS