Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4410 |
Symbol | murD |
ID | 1186091 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 4977421 |
End bp | 4978767 |
Gene Length | 1347 bp |
Protein Length | 448 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637395750 |
Product | UDP-N-acetylmuramoylalanine--D-glutamate ligase |
Protein accession | NP_794164 |
Protein GI | 28871545 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTCCCTGA TCGTTTCCGA CCGCTTCCGC ATTGTTGTGG GGCTTGGCAA GAGTGGCATG TCCCTGGTTC GCTTCCTGGC GAACCGGGGC GTGTCCTTTG CTGTGGCCGA CACGCGGGAA AATCCTCCTG AGCTGGCGAC TTTGCGTCGT GACTATCCTC AGGTGGAAGT GCGGTGTGGC GAACTGGACG TGGACTTCCT CTGCCGTGCC GACGAGCTTT ATGTCAGCCC TGGTCTGGCC CTGGCCACAC CGGCCTTGCA GCAGGCGCAT GCACGCGGCG CCAAGCTGTC CGGCGACATC GAACTGTTTG CCCGTTACGC CAAGGCACCG GTGATTGCGA TTACCGGTTC CAACGCGAAA AGCACCGTGA CCACGCTGGT CGGCGAGATG GCCGCAGCTG CCGGCAAGCG TGTTGCTGTG GGCGGCAACC TGGGCACCCC GGCGCTGGAC CTGCTCAGCG ATGATGTCGA GTTGTACGTG ATGGAATTGT CCAGTTTTCA GCTCGAAACC ACTGATCAGC TCAATGCCGA AGTGGCGACC GTGCTGAACA TCAGCGAAGA CCATATGGAC CGTTATTCCG GTCTGCCGGC CTATCACCTC GCCAAGCACC GTATTTTCCG TGGCGCGCGG CAAGTAGTGG TCAATCGGCA GGACGCGCTG TCCCGTCCGT TGATCGGCGA AGGCCTGCCT TGCTGGACGT TCGGCCTCAA CAAGCCTGAC TTCCACGGCT TTGGTCTGCG TGAAGAGAAC GGCGAAAAAT TCCTGGCATT CCAGTTCGAG AACCTGATGC CGGTGAGCGA GCTGAAAGTT CGCGGCGCAC ACAATCAGGC TAACGCACTG GCAGCCCTGG CGCTGGGGCA TGCCGTGGGC CTGCCGTTCG ACGCCATGCT TTCCAGCCTG CGTGAGTTCA CCGGCCTTGA GCACCGCTGC CAATGGCTGC GTGAGCGCAA TGGCGTGGAC TACTACAACG ATTCCAAGGC CACCAACGTG GGTGCTGCAC TGGCCGCTAT CGAAGGCCTG GGCTCGGATA TCGGCGGCAA GCTGGTGTTG ATCGCCGGTG GCGATGGCAA AGGTGCCGAC TTCAGCGGCC TGCGTGCCCC CGTGGCTAAA TACTGCCGCG CTGCGGTGTT GCTGGGTCGC GATGCCGAGC TGATTGCCCA GGCGCTGGGT GATGCCGTGC CGCTGATTCG TGTCGACACG GTTCAGGCGG CTGCCGAGCG CAGCGCCGAG CTGGCTCAGC GCGGCGATGC CGTGTTGCTT TCCCCTGCAT GCGCCAGTCT GGACATGTTC AAGAATTATG AAGAGCGCGG ACGTGTGTTC GCGCAGGCAG TGGAGTGCTT GTCATGA
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Protein sequence | MSLIVSDRFR IVVGLGKSGM SLVRFLANRG VSFAVADTRE NPPELATLRR DYPQVEVRCG ELDVDFLCRA DELYVSPGLA LATPALQQAH ARGAKLSGDI ELFARYAKAP VIAITGSNAK STVTTLVGEM AAAAGKRVAV GGNLGTPALD LLSDDVELYV MELSSFQLET TDQLNAEVAT VLNISEDHMD RYSGLPAYHL AKHRIFRGAR QVVVNRQDAL SRPLIGEGLP CWTFGLNKPD FHGFGLREEN GEKFLAFQFE NLMPVSELKV RGAHNQANAL AALALGHAVG LPFDAMLSSL REFTGLEHRC QWLRERNGVD YYNDSKATNV GAALAAIEGL GSDIGGKLVL IAGGDGKGAD FSGLRAPVAK YCRAAVLLGR DAELIAQALG DAVPLIRVDT VQAAAERSAE LAQRGDAVLL SPACASLDMF KNYEERGRVF AQAVECLS
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