| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4406 |
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| Symbol | |
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| ID | 1186087 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 4972741 |
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| End bp | 4973700 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637395746 |
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| Product | D-alanine--D-alanine ligase |
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| Protein accession | NP_794160 |
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| Protein GI | 28871541 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
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| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.206514 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGCCG TTGCCCGGTC TTCCCTGCGC TCGACACTTG AGCCGAAAAG CTTCGGCCGT
GTCGCCGTGC TCTTCGGTGG CAAGAGTGCC GAGCGGGAAG TCTCCCTGAA CTCGGGGAAT
GCAGTGCTCA AGGCGCTGCT CGACGCTGGC GTGGATGCGT TCGGCATCGA TGTGGGCGAC
GACTTCCTGC AGCGACTGGT CAGCGAAAAA ATCGACCGTG CGTTTATTGT CCTGCACGGC
CGCGGCGGCG AAGACGGCAC CATGCAAGGG CTGCTGGAAT GTCTGGAAAT CCCTTACACC
GGCAGCGGTG TACTGGCTTC GGCACTGGCA ATGGACAAGT TGCGCACCAA GCAGGTCTGG
CAGAGCCTTG GCCCTGCAAC GCCGCTGCAC GCCGTTCTGG AAAACGAGAA CGATTGTATT
TGCGCGGCCA CGGAACTGGG CTTCCCTTTG ATCGTCAAAC CGGCCCATGA AGGTTCAAGT
ATCGGTATGG CGAAGGTGAA CAGCGTCGAT GAATTGATCG CCGCCTGGAA AGCTGCCAGT
ACCTACGATT CGCAAGTATT AGTCGAACAG TGGATTCAGG GTCCTGAGTT TACTGTGGCG
TCTCTGCGTG GCCAGGTGTT GCCTCCCATT GGCCTGGGCA CTCCTCACAG TTTTTATGAT
TACGACGCCA AGTACCTGGC CTCCGATACT CAGTACCGGA TCCCGTGTGG GCTTGACGAT
GCACAGGAAC AGCAACTCAA ACAACTTGCA GCACGCGCGT GCGACGCCAT CGGCATTGCA
GGGTGGGCGC GCACGGATGT GATGCAGGAC GCAGAGGGCA AGTTCTGGCT GTTGGAAGTC
AATACCGTGC CCGGCATGAC CGATCACAGT CTGGTGCCGA TGGCAGCACG CGCTGCCGGT
CTGAACTTTC AACAACTGGT GTTGGCGATA CTAGCCGACA GCGTTCAGGC GAGAGGTTAA
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| Protein sequence | MTAVARSSLR STLEPKSFGR VAVLFGGKSA EREVSLNSGN AVLKALLDAG VDAFGIDVGD
DFLQRLVSEK IDRAFIVLHG RGGEDGTMQG LLECLEIPYT GSGVLASALA MDKLRTKQVW
QSLGPATPLH AVLENENDCI CAATELGFPL IVKPAHEGSS IGMAKVNSVD ELIAAWKAAS
TYDSQVLVEQ WIQGPEFTVA SLRGQVLPPI GLGTPHSFYD YDAKYLASDT QYRIPCGLDD
AQEQQLKQLA ARACDAIGIA GWARTDVMQD AEGKFWLLEV NTVPGMTDHS LVPMAARAAG
LNFQQLVLAI LADSVQARG
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