| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4385 |
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| Symbol | |
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| ID | 1186066 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 4946342 |
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| End bp | 4948633 |
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| Gene Length | 2292 bp |
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| Protein Length | 763 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637395726 |
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| Product | Rhs element Vgr protein |
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| Protein accession | NP_794140 |
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| Protein GI | 28871521 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGGACG CAAACGCAAC CCATATTGCC CTCACCCTGG AGGGGATATC CGTTGATTTT
CAGGTGCTCA GCTTCTTAGG CAGTGAAGCC CTTAATCAGC CGTTCTGCTT CGACATCGAA
CTGGTCAGCG CCCGCCCCGA TCTGAAGCTC GAAGAGTTGC TGCACAAGCG TGGCTGCCTG
ACCTTCGGCG CCACAGGCAA CGGCCTTGTT CACGGTCTGG TCTATCGCAT CACGCAAGGC
GACTCTGGCA AAAGCCTGAC CCGCTACAGC ATCAGGCTCG TGCCGCAGCT GTCTTACCTG
CGCCACAACC ACGACCAACA AATCTTCCAG CATCTGACCG TACCGAAGAT CATCGCGAAG
GTCCTCGAAG CCCGTGGCAT CCTGGCCGAC GCCTACCGCT TTCAGCTCGG CGCGACCTAC
CCCAAGCGCG ATTACTGCGT GCAGTACGAC GAGTCAGACC TGCATTTCAT CCAGCGTCTG
TGCGAAGAAG AAGGCATTCA CTTCCACTTC CAGCACAGTG CCAGCGGTCA CACACTGGTG
TTCGGCGATG ATCAGACGGT GTTCCGAAAA TTAGCGCCAG TGAGCTACCA GCAAGACTCC
GGCATGGCCG CCGAAAGGCC GGTGATCAAA CGTTTCAACC TGCGTCTGGA AACCCGCACC
ACCCGCGTCA GCCGCCGGGA TTACGATTTC GAAAAGCCCA GCATCCTACC CCAAGGCAGT
GCCAAGATCG CCGCCTCGCC GGACCTTGAA GACTACGATT ACCCTGGCCG CTTTACCGAC
AGCGAACGCG GCAAACAACT GAGCACCCGC GCACTTGAAC GTCATCGCGC CGATTACGCA
CTGGTCGAGG GCAAAGGCGA CGAGCCGACG CTGGTCAGCG GCCATTTCCT GGCCCTGAGC
GAGCATCCGC GCGCAGAGTG GAACGACCTT TGGCTACTGC TGGAAGTCAT TCACGAGGGC
AAACAGCCGC AAGTGCTGGG CGAAAACGTC ACCAGCGACG TCACGGATAA CAAAGACGAT
TTTCACCAAG GTTACCACAA TCGCTTCCTG GCAACGCCGT GGGATGCGCA TTACCGCCCT
GCTCTGGAAC ATCCAAAACC CAAAGCGCTG GGTATCCAGA CGGCTTTCGT CACCGGGCCA
CCGGGTGAAG AAATCCATTG CGACGAATAC GGGCGTGTCA AAGTCCAGTT CCATTGGGAT
CGTGACGGTC AGGCCAACGA TAACTCCAGC TGCTGGTTGC GCGTCGCCAC TGGCTGGGCC
GGAAATGCTT ACGGTGGCAT CACCACTCCA CGCGTCGGTA TGGAAGTGCT TGTCACCTAC
CTCGAAGGCG ACCCCGACCA ACCGCTGATC ACCGGCTGCC TGTTTCACAA GGAAAACGTC
GCCCCCTACG ACCTGCCCGC GAACAAGACA CGCAGCACCT TCAAGACGCT CAGCTCACCG
GGCGGCAAGG GCTACAACGA GTTTCGTATC GAAGACAAGA AAGGTGCCGA ACAGATCTAC
CTGCACGCCC AGCGCGACTG GGATGAAAAC ATCGAACACG ACCAGAAAAT CCGCGTCGGC
AACGAGCGCC ACGACACCGT TGAAGCCAAC ACCCTCAGCG AATTCAAGCT AGAGGAGCAC
CGCATCACCC ACCTGGACCG CAAGAGCGAA GCACGGGCGG ATGACCATTT GACCGTCGGC
GCGACCCGGC ACGTGAAAAT CGGCACCGCG CAGTTTGTAG AAGCCGGTAC GGAGATTCAC
TACCACGCGG GCAACAAAGT GGTGGTTGAA GGCGGCGTGG AACTGACAGT CAAGGCCGGC
GGTAGCTTCG TCAAGATTGA TGCAGGTGGC GTGACAATCA GCGGTCCCGA GGCGAAGGTC
AATACAGGAG GTTCTGCAGG TGTCGGGGCC GGGATCGGCA TTCTTGCCCC GCTCATTCCA
GGGCTGGCTG CTGCCGACGC CGCCGGAAAC CTGATGAAAG AAGCCAAGGC CAACCCGACC
TGGCTGGAGC TGAACCTGCA TTACGACAAC CTTGAGCCGG TGCCGGGTGC CTCGTATCGC
GTCGACTTTG CTGATGGGTC TAAGCGCGAG GGCGTGCTGG ACGACGACGG CTTCGCCCGG
CTCGAAAATG TTCCGCAAGG GCCGGCCAAG ATCTACTACG GCGAAAATCC GAGGCCTTTC
AATCGTGAAG GCGTGACCGT TGCTCAGAAC TCGGATGAAA AGGTTAACCA AGATCTACGC
AAACTCGGTC TGGACCCAGA TCAGATCGAT TTACCGGCTC TAGTAGAAAA AGTCGCAGGG
AGAGTGTCAT GA
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| Protein sequence | MLDANATHIA LTLEGISVDF QVLSFLGSEA LNQPFCFDIE LVSARPDLKL EELLHKRGCL
TFGATGNGLV HGLVYRITQG DSGKSLTRYS IRLVPQLSYL RHNHDQQIFQ HLTVPKIIAK
VLEARGILAD AYRFQLGATY PKRDYCVQYD ESDLHFIQRL CEEEGIHFHF QHSASGHTLV
FGDDQTVFRK LAPVSYQQDS GMAAERPVIK RFNLRLETRT TRVSRRDYDF EKPSILPQGS
AKIAASPDLE DYDYPGRFTD SERGKQLSTR ALERHRADYA LVEGKGDEPT LVSGHFLALS
EHPRAEWNDL WLLLEVIHEG KQPQVLGENV TSDVTDNKDD FHQGYHNRFL ATPWDAHYRP
ALEHPKPKAL GIQTAFVTGP PGEEIHCDEY GRVKVQFHWD RDGQANDNSS CWLRVATGWA
GNAYGGITTP RVGMEVLVTY LEGDPDQPLI TGCLFHKENV APYDLPANKT RSTFKTLSSP
GGKGYNEFRI EDKKGAEQIY LHAQRDWDEN IEHDQKIRVG NERHDTVEAN TLSEFKLEEH
RITHLDRKSE ARADDHLTVG ATRHVKIGTA QFVEAGTEIH YHAGNKVVVE GGVELTVKAG
GSFVKIDAGG VTISGPEAKV NTGGSAGVGA GIGILAPLIP GLAAADAAGN LMKEAKANPT
WLELNLHYDN LEPVPGASYR VDFADGSKRE GVLDDDGFAR LENVPQGPAK IYYGENPRPF
NREGVTVAQN SDEKVNQDLR KLGLDPDQID LPALVEKVAG RVS
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