Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4238 |
Symbol | |
ID | 1185918 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 4771535 |
End bp | 4772602 |
Gene Length | 1068 bp |
Protein Length | 355 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637395584 |
Product | ABC transporter, periplasmic substrate-binding protein |
Protein accession | NP_793999 |
Protein GI | 28871380 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
TIGRFAM ID | [TIGR03427] ABC transporter periplasmic binding protein, urea carboxylase region |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.31178 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCAAAAGT CTCGTTTCTT CAGCCTGCTC ACCGCAGGTT TGCTGGCTGC GTTGAGCCTC TCGGCGAATG CCGCCCAGAA AGATCACTTC AACGTCTGCT GGACCATCTA TGCAGGCTGG ATGCCGTGGG AATACGCAGG CAGCCAGGGC ATCGTCGACA AATGGGCCAA GAAATACGGC ATCAAGATTG ATGTCACCCA GCTCAATGAC TACGTCGAAT CCATCAACCA GTACACCGCC GGCCAGTTCG ATGGTTGCAC CATGACCAAC ATGGACGCCC TGACCATCCC GGCCGCTGGT GGCGTGGAAA GCACGGCGCT GATCGTCAGT GACTTCTCCA ACGGCAATGA CGGCATCGTA CTCAAAGGCA AAGACAAGAA AGTCGCCGAC CTGAAAGGCA TGGACGTCAA TCTGGTCGAA CTGTCGGTGT CGCATTACCT GCTGGCCCGT GCGCTGGACT CCGCCAAGCT CAGCGAAAAA GACCTGAAAG TCGTCAACAC CTCGGATGCC GATATCTCGG CTGCTTTCAA TACCGATGAC GTGCAGGCGG TCACCACCTG GAACCCGATG CTGTCGGACA TCAAGGCTAA GCCTGGCGTG ACCGAGGTGT TCAACTCCAG CCAGATCCCT GGCGAGATTA TGGACATGAT GGTCGTCAAT ACTCAGACCC TGAAGGATAA CCCGGCCCTG GGCAAAGCCC TGACCGGCGC ATGGTTTGAA GTGGTCGCGC TGATGAACGC CAAAAACGCC CAGAGCAAAA CCGCACTGGA GCACATGGCC AAGGCATCGG GTACTGATCT GGCCGGTTTC CAGGCGCAGC TCGACACCAC CAGGCTGTTC GCCACGCCCA AGGAAGCGCT TGAGTTCGCC ACCAGCAAAC AACTGCCCGA CACCCAGCGC AAGGTCGCGG ACTTCTCGTT TGCCCACGGC TTGCTCGGTG AAGGCGCGCG TGATGCGAAC GCGGTCGGCA TGACATTTGC CAATGACGTG GTCCTCGGCG ACAAGGCCAA TCTCAAGCTG CACTTTGACC CCAGCTACGT GCAGATGGCC GCCGACGGCA AGCTGTAA
|
Protein sequence | MQKSRFFSLL TAGLLAALSL SANAAQKDHF NVCWTIYAGW MPWEYAGSQG IVDKWAKKYG IKIDVTQLND YVESINQYTA GQFDGCTMTN MDALTIPAAG GVESTALIVS DFSNGNDGIV LKGKDKKVAD LKGMDVNLVE LSVSHYLLAR ALDSAKLSEK DLKVVNTSDA DISAAFNTDD VQAVTTWNPM LSDIKAKPGV TEVFNSSQIP GEIMDMMVVN TQTLKDNPAL GKALTGAWFE VVALMNAKNA QSKTALEHMA KASGTDLAGF QAQLDTTRLF ATPKEALEFA TSKQLPDTQR KVADFSFAHG LLGEGARDAN AVGMTFANDV VLGDKANLKL HFDPSYVQMA ADGKL
|
| |